Virus genomes and virus-host interactions in aquaculture animals
详细信息    查看全文
  • 作者:QiYa Zhang (1)
    Jian-Fang Gui (1)

    1. State Key Laboratory of Freshwater Ecology and Biotechnology
    ; Institute of Hydrobiology ; Chinese Academy of Sciences ; University of the Chinese Academy of Sciences ; Wuhan ; 430072 ; China
  • 关键词:aquaculture ; viral genome ; antiviral defense ; iridoviruses ; reoviruses ; rhabdoviruses ; herpesviruses ; host ; virus interactions
  • 刊名:Science China Life Sciences
  • 出版年:2015
  • 出版时间:February 2015
  • 年:2015
  • 卷:58
  • 期:2
  • 页码:156-169
  • 全文大小:976 KB
  • 参考文献:1. Cressey D. Aquaculture: future fish. Nature, 2009, 458: 398鈥?00
    2. Bostock J, McAndrew B, Richards R. Aquaculture: global status and trends. Phil Trans R Soc B, 2010, 365: 2897鈥?912
    3. Gui JF, Zhu ZY. Molecular basis and genetic improvement of economically important traits in aquaculture animals. Chin Sci Bull, 2012, 57: 1751鈥?760
    4. Fisheries and Administration Agency, Ministry of Agriculture. China Fishery Statistical Yearbook. Beijing: China Agriculture Press, 2014
    5. Tacon A, Metian M. Global overview on the use of fish meal and fish oil in industrially compounded aquafeeds: trends and future prospects. Aquaculture, 2008, 285: 146鈥?58
    6. Daszak P, Cunningham AA, Hyatt AD. Emerging infectious diseases of wildlife鈥攖hreats to biodiversity and human health. Science, 2000, 287: 443鈥?49
    7. Walker PJ, Winton Jr. Emerging viral diseases of fish and shrimp. Vet Res, 2010, 41: 51
    8. Collins JP, Crump ML. Extinction in Our Times: Global Amphibian Decline. New York: Oxford University Press, 2009
    9. Fisher MC. Silent springs: why are all the frogs 鈥渃roaking鈥? PLoS Biol, 2009, 7: e1000198
    10. Echaubard P, Leduc J, Pauli B, Chinchar VG, Robert J, Lesbarr猫res D. Environmental dependency of amphibian-ranavirus genotypic interactions: evolutionary perspectives on infectious diseases. Evol Appl, 2014, doi:10.1111/eva.12169
    11. Lips KR, Brem F, Brenes R, Reeve JD, Alford RA, Voyles J, Carey C, Pessier AP, Livo L, Collins JP. Emerging infectious disease and the loss of biodiversity in a Neotropical amphibian community. Proc Natl Acad Sci USA, 2006, 103: 3165鈥?170
    12. Chinchar VG, Hyatt A, Miyazaki T, Williams T. Family Iridoviridae: poor viral relations no longer. Curr Top Microb Imm, 2009, 328: 123鈥?70
    13. Une Y, Sakuma A, Matsueda H, Nakai K, Murakami M. Ranavirus outbreak in North American bullfrogs ( / Rana catesbeiana), Japan, 2008. Emerg Infect Dis, 2009, 15:1146鈥?147
    14. Hyatt AD, Gould AR, Zupanovic Z, Cunningham AA, Hengstberger S, Whittington RJ, Kattenbelt J, Coupar BE. Comparative studies of piscine and amphibian iridoviruses. Arch Virol, 2000, 145: 301鈥?31
    15. Kik M, Martel A, Spitzen-van der Sluijs A, Pasmans F, Wohlseind P, Gr枚nea A, Rijksa JM. Ranavirus-associated mass mortality in wild amphibians, The Netherlands, 2010: A first report. Vet J, 2012, 190: 284鈥?86
    16. Zhang QY, Gui JF. Aquatic Virology. Beijing: Higher Education Press, 2008
    17. Burnell G, Allan G. New technologies in aquaculture: Improving production efficiency, quality and environmental management. Cambridge: Woodhead Publishing Limited, 2009
    18. Crane M, Hyatt A. Viruses of fish: an overview of significant pathogens. Viruses, 2011, 3: 2025鈥?046
    19. Zhang QY, Gui JF. Atlas of Aquatic Viruses and Viral Diseases. Beijing: Science Press, 2012
    20. King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ, eds. Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses. San Diego: Elsevier Academic Press, 2011
    21. Williams T, Barbosa-Solomieu V, Chinchar VG. A decade of advances in iridovirus research. Adv Virus Res, 2005, 65: 173鈥?48
    22. Tidona CA, Darai G. The complete DNA sequence of lymphocystis disease virus. Virology, 1997, 230: 207鈥?16
    23. Zhang QY, Xiao F, Xie J, Li ZQ, Gui JF. Complete genome sequence of lymphocystis disease virus isolated from China. J Virol, 2004, 78: 6982鈥?994
    24. Band铆n I, Dopazo CP. Host range, host specificity and hypothesized host shift events among viruses of lower vertebrates. Vet Res, 2011, 42: 67
    25. Whittington RJ, Becker JA, Dennis MM. Iridovirus infections in finfish鈥擟ritical review with emphasis on ranaviruses. J Fish Dis, 2010, 33: 95鈥?22
    26. Robert J, George E, De Jesus Andino F, Chen G. Waterborne infectivity of the / Ranavirus frog virus 3 in / Xenopus laevis. Virology, 2011, 417: 410鈥?17
    27. Geng Y, Wang KY, Zhou ZY, Li CW, Wang J, He M, Yin ZQ, Lai WM. First report of a ranavirus associated with morbidity and mor tality in farmed Chinese giant salamanders ( / Andrias davidianus). J Comp Pathol, 2011, 145: 95鈥?02
    28. Dong W, Zhang X, Yang C, An J, Qin J, Song F, Zeng W. Iridovirus infection in Chinese giant salamanders, China, 2010. Emerg Infect Dis, 2011, 17: 2388鈥?389
    29. Brenes R, Gray MJ, Waltzek TB, Wilkes RP, Miller DL. Transmission of ranavirus between ectothermic vertebrate hosts. PLoS One, 2014, 9: e92476
    30. Schloegel LM, Daszak P, Cunningham AA, Speare R, Hill B. Two amphibian diseases, chytridiomycosis and ranaviral disease, are now globally notifiable to the World Organization for Animal Health (OIE): an assessment. Dis Aquat Organ, 2010, 92: 101鈥?08
    31. Miller D, Gray M, Storfer A. Ecopathology of ranaviruses infecting amphibians. Viruses, 2011, 3: 2351鈥?373
    32. Chinchar V. Ranavirus (family Iridoviridae): emerging cold-blooded killers. Arch Virol, 2002, 147: 447鈥?70
    33. Chinchar VG, Waltzek TB. Ranaviruses: not just for frogs. PLoS Pathog, 2014, 10: e1003850
    34. Stuart SN, Chanson JS, Cox NA, Young BE, Rodrigues ASL, Fischman DL, Waller RW. Status and trends of amphibian declines and extinctions worldwide. Science, 2004, 306: 1783鈥?786
    35. Morrison EA, Garner S, Echaubard P, Lesbarr猫res D, Kyle CJ, Brunetti CR. Complete genome analysis of a frog virus 3 (FV3) isolate and sequence comparison with isolates of differing levels of virulence. Virol J, 2014, 11: 46
    36. Mavian C, L贸pez-Bueno A, Fern谩ndez Somalo MP, Alcam铆 A, Alejo A. Complete genome sequence of the European sheatfish virus. J Virol, 2012a, 86: 6365鈥?366
    37. Jancovich JK, Bremont M, Touchman JW, Jacobs BL. Evidence for multiple recent host species shifts among the / Ranaviruses (family Iridoviridae) J Virol, 2010, 84: 2636鈥?647
    38. Lei XY, Ou T, Zhu RL, Zhang QY, Zhang QY. Sequencing and analysis of the complete genome of / Rana grylio virus (RGV). Arch Virol, 2012, 157: 1559鈥?564
    39. Tan WG, Barkman TJ, Chinchar VG, Essani, K. Comparative genomic analyses of frog virus 3, type species of the genus / Ranavirus (family Iridoviridae). Virology, 2004, 323: 70鈥?4
    40. Zhang QY, Li ZQ, Gui JF. Studies on morphogenesis and cellular interactions of / Rana grylio virus in an infected fish cell line. Aquaculture, 1999, 175: 185鈥?97
    41. Zhang QY, Xiao F, Li ZQ, Gui JF. Comparison of sequence homology of major capsid protein gene of / Rananvirus frog virus 3 and / Rana grylio virus isolates from China. Chin J Virol, 2001, 17: 372鈥?74
    42. Zhang QY, Xiao F, Li ZQ, Gui JF, Mai J, Chinchar VG. Characterization of an iridovirus from the cultured pig frog ( / Rana grylio) with lethal syndrome. Dis Aquatic Organ, 2001, 48: 27鈥?6
    43. Zhang QY, Zhao Z, Xiao F, Li ZQ, Gui JF. Molecular characterization of three / Rana grylio virus (RGV) isolates and / Paralichthys olivaceus lymphocystis disease virus (LCDV-C) in iridoviruses. Aquaculture, 2006, 251: 1鈥?0
    44. Jancovich JK, Davidson EW, Morado JF, Jacobs BL, Collins JP. Isolation of a lethal virus from the endangered tiger salamander / Ambystoma tigrinum stebbinsi. Dis Aquat Org, 1997, 31: 161鈥?67
    45. Jancovich JK, Mao J, Chinchar VG, Wyatt C, Case ST, Kumar S, Valente G, Subramanian S, Davidson EW, Collins JP, Jacobs BL. Genomic sequence of a ranavirus (family Iridoviridae) associated with salamander mortalities in North America. Virology, 2003, 316: 90鈥?03
    46. Qin QW, Lam TJ, Sin YM, Shen H, Chang SF, Ngoh GH, Chen CL. Electron microscopic observations of a marine fish iridovirus isolated from brown-spotted grouper, / Epinephelus tauvina. J Virol Method, 2001, 98: 17鈥?4
    47. Song WJ, Qin QW, Qiu J, Huang CH, Wang F, Hew CL. Functional genomics analysis of Singapore grouper iridovirus: complete sequence determination and proteomic analysis. J Virol, 2004, 78: 12576鈥?2590
    48. Huang Y, Huang X, Liu H, Gong J, Ouyang Z, Cui H, Cao J, Zhao Y, Wang X, Jiang Y, Qin Q. Complete sequence determination of a novel reptile iridovirus isolated from soft-shelled turtle and evolutionary analysis of Iridoviridae. BMC Genomics, 2009, 10: 224
    49. Tsai CT, Ting JW, Wu MH, Wu MF, Guo IC, Chang CY. Complete genome sequence of the grouper iridovirus and comparison of genomic organization with those of other iridoviruses. J Virol, 2005, 79: 2010鈥?023
    50. He JG, Lu L, Deng M, He HH, Weng SP, Wang XH, Zhou SY, Long QX, Wang XZ, Chan SM. Sequence analysis of the complete genome of an iridovirus isolated from the tiger frog. Virology, 2002, 292: 185鈥?97
    51. Mavian C, L贸pez-Bueno A, Balseiro A, Casais R, Alcam铆 A, Alejo A. The genome sequence of the emerging common midwife toad virus identifies an evolutionary intermediate within ranaviruses. J Virol, 2012b, 86: 3617鈥?625
    52. Chen ZY, Gui JF, Gao XC, Pei C, Hong YJ, Zhang QY. Genome architecture changes and major gene variations of / Andrias davidianus ranavirus (ADRV). Vet Res, 2013, 44: 101
    53. Zhou ZY, Geng Y, Liu XX, Ren SY, Zhou Y. Characterization of a ranavirus isolated from the Chinese giant salamander ( / Andrias davidianus, Blanchard, 1871) in China. Aquaculture, 2013, 384: 66鈥?3
    54. Wang N, Zhang M, Zhang L, Jing H, Jiang Y, Wu S, Lin X. Complete genome sequence of a ranavirus isolated from Chinese giant salamander ( / Andrias davidianus). Genome Announc, 2014, 2: e01032鈥?3
    55. Li W, Zhang X, Weng S, Zhao G, He J, Dong C. Virion-associated viral proteins of a Chinese giant salamander ( / Andrias davidianus) iridovirus (genus / Ranavirus) and functional study of the major capsid protein (MCP). Vet Microbl, 2014, 172: 129鈥?39
    56. Darai G, Delius H, Clarke J, Apfel H, Schnitzler P, Fl眉gel RM. Molecular cloning and physical mapping of the genome of fish lymphocystis disease virus. Virology, 1985, 146: 292鈥?01
    57. Zhang QY, Ruan HM, Li ZQ, Yuan XP, Gui JF. Infection and propagation of lymphocystis virus isolated from the cultured flounder / Paralichthys olivaceus in grass carp cell lines. Dis Aquatic Org, 2003, 57: 27鈥?4
    58. Xu L, Feng J, Huang Y. Identification of lymphocystis disease virus from paradise fish / Macropodus opercularis (LCDV-PF). Arch Virol, 2014, 159: 2445鈥?449
    59. Huang X, Huang Y, Xu L, Wei S, Ouyang Z, Feng J, Qin Q. Identification and characterization of a novel lymphocystis disease virus isolate from cultured grouper in China. J Fish Dis, 2014, 10, doi:10.1111/jfd.12244
    60. He JG, Deng M, Weng SP, Li Z, Zhou SY, Long QX, Wang XZ, Chan SM. Complete genome analysis of the mandarin fish infectious spleen and kidney necrosis iridovirus. Virology, 2001, 291: 126鈥?39
    61. Jeong JB, Jun LJ, Yoo MH, Kim MS, Komisar JL, Jeong HD. Characterization of the DNA nucleotide sequences in the genome of red sea bream iridoviruses isolated in Korea. Aquaculture, 2003, 220: 119鈥?33
    62. Do JW, Moon CH, Kim HJ, Ko MS, Kim SB, Son JH, Kim JS, An EJ, Kim MK, Lee SK, Han MS, Cha SJ, Park MS, Park MA, Kim YC, Kim JW, Park JW. Complete genomic DNA sequence of rock bream iridovirus. Virology, 2004, 325: 351鈥?63
    63. Ao JQ, Chen XH. Identification and characterization of a novel gene encoding an RGD-containing protein in large yellow croaker iridovirus. Virology, 2006, 355: 213鈥?22
    64. Shi CY, Jia KT, Yang B, Huang J. Complete genome sequence of a megalocytivirus (family Iridoviridae) associated with turbot mortality in China. Virol J, 2010, 7: 159
    65. L眉 L, Zhou SY, Chen C, Weng SP, Chan SM, He JG. Complete genome sequence analysis of an iridovirus isolated from the orangespotted grouper, / Epinephelus coiodes. Virology, 2005, 339: 81鈥?00
    66. Zhang BC, Zhang M, Sun BG, Fang Y, Xiao ZZ, Sun L. Complete genome sequence and transcription profiles of the rock bream iridovirus RBIV-C1. Dis Aquat Org, 2013, 104: 203鈥?14
    67. Eaton HE, Metcalf J, Penny E, Tcherepanov V, Upton C, Brunetti CR. Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes. Virol J, 2007, 4: 11
    68. Abrams AJ, Cannatella DC, Hillis DM, Sawyer SL. Recent host-shifts in ranaviruses: signatures of positive selection in the viral genome. J Gen Virol, 2013, 94: 2082鈥?093
    69. Currylow AF, Johnson AJ, Williams RN. Evidence of ranavirus infections among sympatric larval amphibians and box turtles. J Herpet, 2014, 48:117鈥?21
    70. Sun W, Huang YH, Zhao Z, Gui JF, Zhang QY. Characterization of the / Rana grylio virus 3尾-hydroxysteroid dehydrogenase and its novel role in suppressing virus-induced cytopathic effect. Biochem Biophys Res Commun, 2006, 351: 44鈥?0
    71. Zhao Z, Ke F, Gui JF, Zhang QY. Characterization of an early gene encoding for dUTPase in / Rana grylio virus. Virus Res, 2007, 123: 128鈥?37
    72. Zhao Z, Shi Y, Ke F, Sun W, Gui JF, Zhang QY. Constitutive expression of thymidylate synthase from LCDV-C induces foci formation and anchorage-independent growth in fish cells. Virology, 2008, 372: 118鈥?26
    73. Zhao Z, Ke F, Huang YH, Zhao JG, Gui JF, Zhang QY. Identification and characterization of a novel envelope protein in / Rana grylio virus. J Gen Virol, 2008, 89: 166鈥?872
    74. Whitley DS, Yu K, Sample RC, Sinning A, Henegar J, Norcross E, Chinchar VG. Frog virus 3 ORF 53R, a putative myristoylated membrane protein, is essential for virus replication / in vitro. Virology, 2010, 405: 448鈥?56
    75. He LB, Gao XC, Ke F, Zhang QY. A conditional lethal mutation in / Rana grylio virus ORF 53R resulted in a marked reduction in virion formation. Virus Res, 2013, 177: 194鈥?00
    76. Lei XY, Ou T, Zhang QY. / Rana grylio virus (RGV) 50L is associated with viral matrix and exhibited two distribution patterns. PLoS One, 2012, 7: e43033
    77. He LB, Ke F, Wang J, Gao XC, Zhang QY. / Rana grylio virus (RGV) envelope protein 2L subcellular localization and essential roles in virus infectivity revealed by conditional lethal mutant. J Gen Virol, 2014, 95: 679鈥?90
    78. Chen G, Ward BM, Yu EK, Chinchar VG, Robert J. Improved knockout methodology reveals that Frog virus 3 mutants lacking either the 18K immediate-early gene or the truncated vIF-2 alpha gene are defective for replication / in vivo. J Virol, 2011, 85: 11131鈥?1138
    79. Sample R, Bryan L, Long S, Majji S, Hoskins G, Sinning A, Olivier J, Chinchar VG. Inhibition of iridovirus protein synthesis and virus replication by antisense morpholino oligonucleotides targeted to the major capsid protein, the 18 kDa immediate-early protein, and a viral homolog of RNA polymerase II. Virology, 2007, 358: 311鈥?20
    80. Kim YS, Ke F, Lei XY, Zhu R, Zhang QY. Viral envelope protein 53R gene highly specific silencing and iridovirus resistance in fish cells by a miRNA. PLoS One, 2010, 5: e10308
    81. Majji S, Thodima V, Sample R, Whitley D, Deng Y, Mao J, Chinchar VG. Transcriptome analysis of Frog virus 3, the type species of the genus / Ranavirus, family Iridoviridae. Virology, 2009, 391: 293鈥?03
    82. Guo CJ, Liu D, Wu YY, Yang XB, Yang LS, Mi S, Huang YX, Luo YW, Jia KT, Liu ZY, Chen WJ, Weng SP, Yu XQ, He JG. Entry of tiger frog virus (an Iridovirus) into HepG2 cells via a pH-dependent, atypical, caveola-mediated endocytosis pathway. J Virol, 2011, 85: 6416鈥?426
    83. Yan Y, Cui H, Jiang S, Huang Y, Huang X, Wei S, Xu W, Qin Q. Identification of a novel marine fish virus, Singapore grouper iridovirusencoded microRNAs expressed in grouper cells by Solexa sequencing. PLoS One, 2011, 6: e19148
    84. Cullen BR. microRNAs as mediators of viral evasion of the immune system. Nat Imm, 2013, 14: 205鈥?10
    85. Qiu T, Lu RH, Zhang J, Zhu ZY. Complete nucleotide sequence of the S10 genome segment of grass carp reovirus (GCRV). Dis Aquat Org, 2001, 44: 69鈥?4
    86. Zhang QY, Ruan HM, Li ZQ, Zhang J, Gui JF. Detection of grass carp hemorrhage virus (GCHV) from Vietnam and comparison with GCHV strain from China. High Technol Lett, 2003, 9: 7鈥?3
    87. Wang Q, Zeng W, Liu C, Zhang C, Wang Y, Shi C, Wu S. Complete genome sequence of a reovirus isolated from grass carp, indicating different genotypes of GCRV in China. J Virol, 2012, 86: 12466
    88. Ye X, Tian YY, Deng GC, Chi YY, Jiang XY. Complete genomic sequence of a reovirus isolated from grass carp in China. Virus Res, 2012, 163: 275鈥?83
    89. Fan Y, Rao S, Zeng L, Ma J, Zhou Y, Xu J, Zhang H. Identification and genomic characterization of a novel fish reovirus, Hubei grass carp disease reovirus, isolated in 2009 in China. J Gen Virol, 2013, 94: 2266鈥?277
    90. Pei C, Ke F, Chen ZY, Zhang QY. Complete genome sequence and comparative analysis of grass carp reovirus strain 109 (GCReV-109) with other grass carp reovirus strains reveals no significant correlate regional distribution. Arch Virol, 2014, 159: 2435鈥?440
    91. Jaafar FM, Goodwin AE, Belhouchet M, Merry G, Fang Q, Cantaloube JF, Biagini P, de Micco P, Mertens PP, Attoui H. Complete characterisation of the American grass carp reovirus genome (genus / Aquareovirus: family Reoviridae) reveals an evolutionary link between aquareoviruses and coltiviruses, Virology, 2008, 373: 310鈥?21
    92. Yan XY, Wang Y, Xiong LF, Jian JC, Wu ZH. Phylogenetic analysis of newly isolated grass carp reovirus. SpringerPlus, 2014, 3: 190
    93. Attoui H, Fang Q, Mohd Jaafar F, Cantaloube JF, Biagini P, de Micco P, de Lamballerie X. Common evolutionary origin of aquareoviruses and orthoreoviruses revealed by genome characterization of Golden shiner reovirus, Grass carp reovirus, Striped bass reovirus and golden ide reovirus (genus / Aquareovirus, family Reoviridae). J Gen Virol, 2002, 83: 1941鈥?951
    94. Ke F, He LB, Pei C, Zhang QY. Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG start site. BMC Genomics, 2011, 12: 323
    95. Kibenge MJT, Iwamoto O, Wang Y, Morton A, Godoy MG, Kibenge FSB. Whole-genome analysis of piscine reovirus (PRV) shows PRV represents a new genus in family Reoviridae and its genome segment S1 sequences group it into two separate sub-genotypes. Virol J, 2013, 10: 230
    96. Key T, Read J, Nibert ML, Duncan R. Piscine reovirus encodes a cytotoxic, non-fusogenic, integral membrane protein and previously unrecognized virion outer-capsid proteins. J Gen Virol, 2013, 94: 1039鈥?050
    97. Nibert ML, Duncan R. Bioinformatics of recent aqua- and orthoreovirus isolates from fish: evolutionary gain or loss of FAST and fiber proteins and taxonomic implications. PLoS One, 2013, 8: e68607
    98. Garseth 脜H, Ekrem T, Biering E. Phylogenetic evidence of long distance dispersal and transmission of piscine reovirus (PRV) between farmed and wild Atlantic salmon. PLoS One, 2013, 8: e82202
    99. Zhang X, Jin L, Fang Q, Hui WH, Zhou ZH. 3.3 脜 cryo-EM structure of a nonenveloped virus reveals a priming mechanism for cell entry. Cell, 2010, 141: 472鈥?82
    100. Trask SD, McDonald SM, Patton JT. Structural insights into the coupling of virion assembly and rotavirus replication. Nat Rev Microbiol, 2012, 10: 165鈥?77
    101. Ke F, He LB, Zhang QY. Nonstructural protein NS80 is crucial in recruiting viral components to form aquareoviral factories. PLoS One, 2013, 8: e63737
    102. Hoffmann B, Beer M, Schutze H, Mettenleiter TC. Fish rhabdoviruses: molecular epidemiology and evolution. Curr Top Microb Imm, 2005, 292: 81鈥?17
    103. Dietzgen RG, Kuzmin IV, eds. Rhabdoviruses: molecular taxonomy, evolution, genomics, ecology, host-vector interactions, cytopathology and control. Norfolk: Caister Academic Press, 2012
    104. Tao JJ, Zhou GZ, Gui JF, Zhang QY. Genomic sequence of mandarin fish rhabdovirus with an unusual small non-transcriptional ORF. Virus Res, 2008, 132: 86鈥?6
    105. Zhang QY, Tao JJ, Gui L, Zhou GZ, Ruan HM, Li ZQ, Gui JF. Isolation and characterization of / Scophthalmus maximus (turbot) rhabdovirus. Dis Aquat Org, 2007, 74: 95鈥?05
    106. Zhu RL, Lei XY, Ke F, Yuan XP, Zhang QY. Genome of turbot rhabdovirus exhibits unusual non-coding regions and an additional ORF that could be expressed in fish cell. Virus Res, 2011, 155: 495鈥?05
    107. Zhu RL, Zhang QY. Determination and analysis of the complete genome sequence of / Paralichthys olivaceus rhabdovirus (PORV). Arch Virol, 2014, 159: 817鈥?20
    108. Ou T, Zhu RL, Chen ZY, Zhang QY. Isolation and identification of a lethal rhabdovirus from farmed rice field eels / Monopterus albus. Dis Aquat Org, 2013, 106: 197鈥?06
    109. Ahne W, Jorgensen PEV, Olesen NJ. Serological examination of a rhabdovirus isolated from snakehead fish ( / Ophicephalus striatus) in Thailand with ulcerative syndrome. J Appl Ichthyol, 1988. 4:194鈥?96
    110. Zeng W, Wang Q, Wang Y, Liu C, Liang H, Fang X, Wu S. Genomic characterization and taxonomic position of a rhabdovirus from a hybrid snakehead. Arch Virol, 2014, 159: 2469鈥?473
    111. Kim DH, Oh HK, Eou JI, Seo HJ, Kim SK, Oh MJ, Nam SW, Choi TJ. Complete nucleotide sequence of the hirame rhabdovirus, a pathogen of marine fish. Virus Res, 2005, 107: 1鈥?
    112. Chen HL, Liu H, Liu ZX, He JQ, Gao LY, Shi XJ, Jiang YL. Characterization of the complete genome sequence of pike fry rhabdovirus. Arch Virol, 2009, 154: 1489鈥?494
    113. Teng Y, Liu H, Lv J, Fan WH, Zhang QY, Qin QW. Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp ( / Cyprinus carpio) in China. Arch Virol, 2007, 152: 1457鈥?465
    114. Talbi C, Cabon J, Baud M, Bourjaily M, de Boiss茅son C, Castric J, Bigarr茅 L. Genetic diversity of perch rhabdoviruses isolates based on the nucleoprotein and glycoprotein genes. Arch Virol, 2011, 156: 2133鈥?144
    115. Gadd T. Fish rhabdoviruses: viral haemorrhagic septicaemia virus (VHSV) and perch rhabdovirus (PRV): study of viral strains and the disease epidemiology in Finland. Helsinki, 2013
    116. Sch眉tze H, Enzmann PJ, Kuchling R, Mundt E, Niemann H, Mettenleiter TC. Complete genomic sequence of the fish rhabdovirus infectious haematopoietic necrosis virus. J Gen Virol, 1995, 76: 2519鈥?527
    117. Pierce LR, Stepien CA. Evolution and biogeography of an emerging quasispecies: diversity patterns of the fish Viral Hemorrhagic Septicemia virus (VHSv). Mol Phylogenet Evol, 2012, 63: 327鈥?41
    118. He M, Yan XC, Liang Y, Sun XW, Teng CB. Evolution of the viral hemorrhagic septicemia virus: divergence, selection and origin. Mol Phylogenet Evol, 2014, 77: 34鈥?0
    119. Kurath G. Fish novirhabdoviruses. In: Dietzgen RG et al., eds. Rhabdoviruses: Molecular Taxonomy, Evolution, Genomics, Ecology, Host-Vector Interactions, Cytopathology and Control. Norfolk: Caister Academic Press, 2012. 89鈥?16
    120. Kolodziejek J, Schachner O, D鈥橪irrwald R, Durrwald R, Latif M, Nowotny N. 鈥淢id-G鈥?region sequences of the glycoprotein gene of Austrian infectious hematopoietic necrosis virus isolates form two lineages within European isolates and are distinct from American and Asian lineages. J Clin Microbiol, 2008, 46: 22鈥?0
    121. Miller O, Fuller FJ, Gebreyes WA, Miller O, Fuller FJ, Gebreyes WA, Lewbart GA, Shchelkunov IS, Shivappa RB, Joiner C, Woolford G, Stone DM, Dixon PF, Raley ME, Levine JF. Phylogenetic analysis of spring virema of carp virus reveals distinct subgroups with common origins for recent isolates in North America and the UK. Dis Aquat Org, 2007, 76: 193鈥?04
    122. Stone DM, Kerr RC, Hughes M, Radford AD, Darby AC. Characterisation of the genomes of four putative vesiculoviruses: tench rhabdovirus, grass carp rhabdovirus, perch rhabdovirus and eel rhabdovirus European X. Arch Virol, 2013, 158: 2371鈥?377
    123. Xiao Y, Shao L, Zhang C, An W. Genomic evidence of homologous recombination in spring viremia of carp virus: a negatively single stranded RNA virus. Virus Res, 2014, 189: 271鈥?79
    124. Einer-Jensen K, Harmache A, Biacchesi S, Bremont M, Stegmann A, Lorenzen N. High virulence differences among phylogenetically distinct isolates of the fish rhabdovirus viral hemorrhagic septicaemia virus are not explained by variability of the surface glycoprotein G or the non-virion protein Nv. J Gen Virol, 2014, 95: 307鈥?16
    125. Kell A, Wargo AR, Kurath G. The role of virulence in / in vivo superinfection fitness of a vertebrate RNA virus, infections hematopoietic necrosis virus. J Virol, 2013, 87: 8145鈥?157
    126. Hanson L, Dishon A, Kotler M. Herpesviruses that infect fish. Viruses, 2011, 3: 2160鈥?191
    127. van Beurden SJ, Forlenza M, Westphal AH, Wiegertjes GF, Haenen OL, Engelsma MY. The alloherpesviral counterparts of interleukin 10 in European eel and common carp. Fish Shellfish Imm, 2011, 31: 1211鈥?217
    128. Davison AJ, Kurobe T, Gatherer D, Cunningham C, Korf I, Fukuda H, Hedrick RP, Waltzek TB. Comparative genomics of carp herpesviruses. J Virol, 2013, 87: 2908鈥?922
    129. Lovy J, Friend SE. Cyprinid herpesvirus-2 causing mass mortality in goldfish: applying electron microscopy to histological samples for diagnostic virology. Dis Aquat Org, 2014, 108: 1鈥?
    130. Xu J, Zeng L, Zhang H, Zhou Y, Ma J, Fan YD. Cyprinid herpesvirus 2 infection emerged in cultured gibel carp, / Carassius auratus gibelio in China. 2 infection emerged in cultured gibel carp, / Carassius auratus gibelio in China. Vet Microb, 2013, 166: 138鈥?44
    131. Costes B, Raj VS, Michel B, Fournier G, Thirion M, Gillet L, Mast J, Lieffrig F, Bremont M, Vanderplasschen A. The major portal of entry of koi herpesvirus in / Cyprinus carpio is the skin. J Virol, 2009, 83: 2819鈥?830
    132. Eide KE, Miller-Morgan T, Heidel JR, Kent ML, Bildfella RJ, LaPatra S, Watson G, Jin L. Investigation of koi herpesvirus latency in koi. J Virol, 2011, 85: 4954鈥?962
    133. Reed AN, Izume S, Dolan BP, LaPatra S, Kent M, Dong J, Jin L. Identification of B cells as a major site for cyprinid herpesvirus 3 latency. J Virol, 2014, 88: 9297鈥?09
    134. Gotesman M, Kattlun J, Bergmann SM, El-Matbouli M. CyHV-3: the third cyprinid herpesvirus. Dis Aquat Org, 2013, 105: 163鈥?74
    135. Dong C, Weng S, Li W, Li X, Yi Y, Liang Q, He J. Characterization of a new cell line from caudal fin of koi, Cyprinus carpio koi, and first isolation of cyprinid herpesvirus 3 in China. Virus Res, 2011, 161: 140鈥?49
    136. Aoki T, Hirono I, Kurokawa K, Fukuda H, Nahary R, Eldar A, Davison AJ, Waltzek TB, Bercovier H, Hedrick RP. Genome sequencing of three koi herpesvirus isolates representing the expanding distribution of an emerging disease threatening koi and common carp worldwide. J Virol, 2007, 81: 5058鈥?06
    137. Kim HJ, Kwon SR. Evidence for two koi herpesvirus (KHV) genotypes in South Korea. Dis Aquat Org, 2013, 104: 197鈥?02
    138. Davison AJ, Kurobe T, Gatherer D, Cunningham C, Korf I, Fukuda H, Hedrick RP, Waltzek TB. Comparative genomics of carp herpesviruses. J Virol, 2013, 87:2908鈥?922
    139. Davison AJ. Channel catfish virus: a new type of herpesvirus. Virology, 1992, 186: 9鈥?4
    140. van Beurden SJ, Bossers A, Voorbergen-Laarman MH, Haenen OL, Peters S, Abma-Henkens MH, Peeters BP, Rottier PJ, Engelsma MY. Complete genome sequence and taxonomic position of anguillid herpesvirus 1. J Gen Virol, 2010, 91 (Pt 4): 880鈥?87
    141. van Beurden SJ, Gatherer D, Kerr K, Galbraith J, Herzyk P, Peeters BP, Rottier PJ, Engelsma MY, Davison AJ. Anguillid herpesvirus 1 transcriptome. J Virol, 2012, 86: 10150鈥?0161
    142. van Beurden SJ, Peeters BP, Rottier PJ, Davison AJ, Engelsma MY. Genome-wide gene expression analysis of anguillid herpesvirus-1. BMC Genomics, 2013, 14: 83
    143. Ackermann M, Koriabine M, Hartmann-Fritsch F, de Jong PJ, Lewis TD, Schetle N, Work TM, Dagenais J, Balazs GH, Leong JA. The genome of chelonid herpesvirus 5 harbors atypical genes. PLoS One, 2012, 7: e46623
    144. Ren W, Chen H, Renault T, Cai Y, Bai C, Wang C, Huang J. Complete genome sequence of acute viral necrosis virus associated with massive mortality outbreaks in the Chinese scallop, / Chlamys farreri. Virol J, 2013, 10:1鈥?0
    145. Ito T, Maeno Y. Susceptibility of Japanese Cyprininae fish species to cyprinid herpesvirus 2. Vet Microb, 2014, 169: 128鈥?34
    146. Marcos-Lopez M, Waltzek TB, Hedrick RP, Baxa DV, Garber AF, Liston R, Johnsen E, Backman S, Ferguson HW. Characterization of a novel alloherpesvirus from Atlantic cod ( / Gadus morhua). J Vet Diagn Invest, 2012, 24: 65鈥?3
    147. Zhang H, Zeng L, Fan Y, Zhou Y, Xu J, Ma J. A Loop-mediated isothermal amplification assay for rapid detection of cyprinid herpesvirus 2 in gibel carp ( / Carassius / auratus gibelio). Sci World J, 2014, 2014: 716413
    148. Xu L, Podok P, Xie J, Lu L. Comparative analysis of differential gene expression in kidney tissues of moribund and surviving crucian carp ( / Carassius auratus gibelio) in response to cyprinid herpesvirus 2 infection. Arch Virol, 2014, 159: 1961鈥?974
    149. Sunarto A, McColl KA, Crane MS, Schat KA, Slobedman B, Barnes AC, Walker PJ. Characteristics of cyprinid herpesvirus 3 in different phases of infection: implications for disease transmission and control. Virus Res, 2014, 188: 45鈥?3
    150. Yi Y, Zhang H, Lee X, Weng S, He J, Dong C. Extracellular virion proteins of two Chinese CyHV-3/KHV isolates, and identification of two novel envelope proteins. Virus Res, 2014, 191C: 108鈥?16
    151. Sunyer JO. Fishing for mammalian paradigms in the teleost immune system. Nat Imm, 2013, 14: 320鈥?26
    152. Sun JC, Ugolini S, Vivier E. Immunological memory within the innate immune system. EMBO J, 2014, 33: 1295鈥?303
    153. Adamek M, Steinhagen D, Irnazarow I, Hikima JI, Jung TS, Aoki T. Biology and host response to Cyprinid herpesvirus 3 infection in common carp. Dev Comp Immunol, 2014, 43: 151鈥?59
    154. Munang鈥檃ndu HM, Mutoloki S, Evensen 脴. Acquired immunity and vaccination against infectious pancreatic necrosis virus of salmon. Dev Comp Immunol, 2014, 43: 184鈥?96
    155. Somamoto T, Koppang EO, Fischer U. Antiviral functions of CD8+ cytotoxic T cells in teleost fish. Dev Comp Immunol, 2014, 43: 197鈥?04
    156. Zhang YB, Gui JF. Molecular regulation of interferon antiviral response in fish. Dev Comp Immunol, 2012, 38: 193鈥?02
    157. Wang L, Qiu L, Zhou Z, Song L. Research progress on the mollusc immunity in China. Dev Comp Immunol, 2013, 39: 2鈥?0
    158. Li F, Xiang J. Recent advances in researches on the innate immunity of shrimp in China. Dev Comp Immunol, 2013, 39: 11鈥?6
    159. Wang XW, Wang JX. Diversity and multiple functions of lectins in shrimp immunity. Dev Comp Immunol, 2013, 39: 27鈥?8
    160. Zhu LY, Nie L, Zhu G, Xiang LX, Shao JZ. Advances in research of fish immune-relevant genes: a comparative overview of innate and adaptive immunity in teleosts. Dev Comp Immunol, 2013, 39: 39鈥?2
    161. Peng XX. Proteomics and its applications to aquaculture in China: infection, immunity, and interaction of aquaculture hosts with pathogens. Dev Comp Immunol, 2013, 39: 63鈥?1
    162. Zhang S, Wang Z, Wang H. Maternal immunity in fish. Dev Comp Immunol, 2013, 39: 72鈥?8
    163. Esteban M脕. An overview of the immunological defenses in fish skin. ISRN Imm, 2012, Article ID 853470, 1-29
    164. Xu Z, Parra D, G贸mez D, Salinas I, Zhang YA, von Gersdorff J酶rgensen L, Heinecke RD, Buchmann K, LaPatra S, Sunyer JO. Teleost skin, an ancient mucosal surface that elicits gut-like immune responses. Proc Natl Acad Sci USA, 2013, 110: 13097鈥?3102
    165. Bordon Y. Evolution: a gutsy defence of the skin. Nat Rev Immunol, 2013, 13: 616鈥?17
    166. Pasparakis M, Haase I, Nestle FO. Mechanisms regulating skin immunity and inflammation. Nat Rev Immunol, 2014, 14: 289鈥?01
    167. Collet B. Innate immune responses of salmonid fish to viral infections. Dev Comp Immunol, 2014, 43: 160鈥?73
    168. Castro R, Jouneau L, Pham HP, Bouchez O, Giudicelli V, Lefranc MP, Quillet E, Benmansour A, Cazals F, Six A, Fillatreau S, Sunyer O, Boudinot P. Teleost fish mount complex clonal IgM and IgT responses in spleen upon systemic viral infection. PLoS Pathog, 2013, 9: e1003098
    169. Wang T, Secombes CJ. The cytokine networks of adaptive immunity in fish. Fish Shellfish Immunol, 2013, 35: 1703鈥?718
    170. Rombout JH, Yang G, Kiron V. Adaptive immune responses at mucosal surfaces of teleost fish. Fish Shellfish Immunol, 2014, pii: S1050-4648 (14)00305-2
    171. Ye J, Kaattari IM, Ma C, Kaattari S. The teleost humoral immune response. Fish Shellfish Immunol, 2013, 35: 1719鈥?728
    172. Grayfer L, Andino Fde J, Chen G, Chinchar GV, Robert J. Immune evasion strategies of ranaviruses and innate immune responses to these emerging pathogens. Viruses, 2012, 4: 1075鈥?092
    173. Chen ZY, Lei XY, Zhang QY. The antiviral defense mechanisms in mandarin fish induced by DNA vaccine against a rhabdovirus. Vet Microbiol, 2012, 157: 264鈥?75
    174. Shi Y, Zhao Z, Zhu XP, Chen KC, Zhang QY. Expression and functional characterization of a gene associated with retinoid-interferon-induced mortality 19 (GRIM-19) from orange-spotted grouper ( / Epinephelus coioides). Fish Shellfish Imm, 2013, 34: 273鈥?79
    175. Zhu R, Wang J, Lei XY, Gui JF, Zhang QY. Evidence for / Paralichthys olivaceus IFITM1 antiviral effect by impeding viral entry into target cells. Fish Shellfish Immunol, 2013, 35: 918鈥?26
    176. Zhu R, Chen ZY, Wang J, Yuan JD, Liao XY, Gui JF, Zhang QY. Thymus cDNA library survey uncovers novel features of immune molecules in Chinese giant salamander ( / Andrias davidianus). Dev Comp Immunol, 2014, 46: 413鈥?22
    177. Sun F, Zhang YB, Liu TK, Gan L, Yu FF, Liu Y, Gui JF. Characterization of fish IRF3 as an IFN-inducible protein reveals evolving regulation of IFN response in vertebrates. J Immunol, 2010, 185: 7573鈥?582
    178. Sun F, Zhang YB, Liu TK, Shi J, Wang B, Gui JF. Fish MITA activation serves as a mediator for distinct fish IFN gene activation dependent on IRF3 or IRF7. J Immunol, 2011, 187: 2531鈥?539
    179. Liu TK, Zhang YB, Liu Y, Sun F, Gui JF. Cooperative roles of fish PKZ and PKR in IFN-mediated antiviral response. J Virol, 2011, 85: 12769鈥?2780
  • 刊物主题:Life Sciences, general;
  • 出版者:Springer Berlin Heidelberg
  • ISSN:1869-1889
文摘
Over the last 30 years, aquaculture has become the fastest growing form of agriculture production in the world, but its development has been hampered by a diverse range of pathogenic viruses. During the last decade, a large number of viruses from aquatic animals have been identified, and more than 100 viral genomes have been sequenced and genetically characterized. These advances are leading to better understanding about antiviral mechanisms and the types of interaction occurring between aquatic viruses and their hosts. Here, based on our research experience of more than 20 years, we review the wealth of genetic and genomic information from studies on a diverse range of aquatic viruses, including iridoviruses, herpesviruses, reoviruses, and rhabdoviruses, and outline some major advances in our understanding of virus-host interactions in animals used in aquaculture.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700