Human milk microbiota profiles in relation to birthing method, gestation and infant gender
详细信息    查看全文
  • 作者:Camilla Urbaniak ; Michelle Angelini ; Gregory B. Gloor ; Gregor Reid
  • 关键词:Human milk ; Milk microbiota ; Factors affecting the milk microbiota
  • 刊名:Microbiome
  • 出版年:2016
  • 出版时间:December 2016
  • 年:2016
  • 卷:4
  • 期:1
  • 全文大小:721 KB
  • 参考文献:1.Guaraldi F, Salvatori G. Effect of breast and formula feeding on gut microbiota shaping in newborns. Front Cell Infect Microbiol. 2012;2:94.CrossRef PubMed PubMedCentral
    2.Stuebe A. The risks of not breastfeeding for mothers and infants. Rev Obstet Gynecol. 2009;2:222–31.PubMed PubMedCentral
    3.Grönlund M-M, Gueimonde M, Laitinen K, Kociubinski G, Grönroos T, Salminen S, et al. Maternal breast-milk and intestinal bifidobacteria guide the compositional development of the Bifidobacterium microbiota in infants at risk of allergic disease. Clin Exp Allergy. 2007;37:1764–72.CrossRef PubMed
    4.Jost T, Lacroix C, Braegger CP, Chassard C. New insights in gut microbiota establishment in healthy breast fed neonates. PLoS One. 2012;7:e44595.CrossRef PubMed PubMedCentral
    5.Vael C, Vanheirstraeten L, Desager KN, Goossens H. Denaturing gradient gel electrophoresis of neonatal intestinal microbiota in relation to the development of asthma. BMC Microbiol. 2011;11:68.CrossRef PubMed PubMedCentral
    6.Vael C, Nelen V, Verhulst SL, Goossens H, Desager KN. Early intestinal Bacteroides fragilis colonisation and development of asthma. BMC Pulm Med. 2008;8:19.CrossRef PubMed PubMedCentral
    7.Vael C, Verhulst SL, Nelen V, Goossens H, Desager KN. Intestinal microflora and body mass index during the first three years of life: an observational study. Gut Pathog. 2011;3:8.CrossRef PubMed PubMedCentral
    8.Chouraqui JP, Grathwohl D, Labaune JM, Hascoet JM, de Montgolfier I, Leclaire M, et al. Assessment of the safety, tolerance, and protective effect against diarrhea of infant formulas containing mixtures of probiotics or probiotics and prebiotics in a randomized controlled trial. Am J Clin Nutr. 2008;87:1365–73.PubMed
    9.Dilli D, Aydin B, Fettah ND, Özyazıcı E, Beken S, Zenciroğlu A, et al. The ProPre-Save study: effects of probiotics and prebiotics alone or combined on necrotizing enterocolitis in very low birth weight infants. J Pediatr. 2015;166:545–51. e1.CrossRef PubMed
    10.Kankaanpää PE, Yang B, Kallio HP, Isolauri E, Salminen SJ. Influence of probiotic supplemented infant formula on composition of plasma lipids in atopic infants. J Nutr Biochem. 2002;13:364–9.CrossRef PubMed
    11.Mehta R, Petrova A. Biologically active breast milk proteins in association with very preterm delivery and stage of lactation. J Perinatol. 2011;31:58–62.CrossRef PubMed
    12.Dizdar EA, Sari FN, Degirmencioglu H, Canpolat FE, Oguz SS, Uras N, et al. Effect of mode of delivery on macronutrient content of breast milk. J Matern Fetal Neonatal Med. 2014;27:1099–102.CrossRef PubMed
    13.Wang X-F, Cao R-M, Li J, Wu J, Wu S-M, Chen T-X. Identification of sociodemographic and clinical factors associated with the levels of human β-defensin-1 and human β-defensin-2 in the human milk of Han Chinese. Br J Nutr. 2014;111:867–74.CrossRef PubMed
    14.Mehta R, Petrova A. Very preterm gestation and breastmilk cytokine content during the first month of lactation. Breastfeed Med. 2011;6:21–4.CrossRef PubMed
    15.Koenig A, de Albuquerque Diniz EM, Barbosa SFC, Vaz FAC. Immunologic factors in human milk: the effects of gestational age and pasteurization. J Hum Lact. 2005;21:439–43.CrossRef PubMed
    16.Zanardo V, Nicolussi S, Carlo G, Marzari F, Faggian D, Favaro F, et al. Beta endorphin concentrations in human milk. J Pediatr Gastroenterol Nutr. 2001;33:160–4.CrossRef PubMed
    17.Powe CE, Knott CD, Conklin-Brittain N. Infant sex predicts breast milk energy content. Am J Hum Biol. 2010;22:50–4.CrossRef PubMed
    18.Fujita M, Roth E, Lo Y-J, Hurst C, Vollner J, Kendell A. In poor families, mothers’ milk is richer for daughters than sons: a test of Trivers-Willard hypothesis in agropastoral settlements in Northern Kenya. Am J Phys Anthropol. 2012;149:52–9.CrossRef PubMed
    19.Chen J, Bittinger K, Charlson ES, Hoffmann C, Lewis J, Wu GD, et al. Associating microbiome composition with environmental covariates using generalized UniFrac distances. Bioinformatics. 2012;28:2106–13.CrossRef PubMed PubMedCentral
    20.Hunt KM, Foster JA, Forney LJ, Schütte UME, Beck DL, Abdo Z, et al. Characterization of the diversity and temporal stability of bacterial communities in human milk. PLoS One. 2011;6:e21313.CrossRef PubMed PubMedCentral
    21.Jost T, Lacroix C, Braegger C, Chassard C. Assessment of bacterial diversity in breast milk using culture-dependent and culture-independent approaches. Br J Nutr. 2013;110:1253–62.CrossRef PubMed
    22.Urbaniak C, Burton JP, Reid G. Breast, milk and microbes: a complex relationship that does not end with lactation. Womens Health (Lond Engl). 2012;8:385–98.CrossRef
    23.Cabrera-Rubio R, Collado MC, Laitinen K, Salminen S, Isolauri E, Mira A. The human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery. Am J Clin Nutr. 2012;96:544–51.CrossRef PubMed
    24.Schwarzberg K, Le R, Bharti B, Lindsay S, Casaburi G, Salvatore F, et al. The personal human oral microbiome obscures the effects of treatment on periodontal disease. PLoS One. 2014;9:e86708.CrossRef PubMed PubMedCentral
    25.Lundequist B, Nord CE, Winberg J. The composition of the faecal microflora in breastfed and bottle fed infants from birth to eight weeks. Acta Paediatr Scand. 1985;74:45–51.CrossRef PubMed
    26.Balmer SE, Wharton BA. Diet and faecal flora in the newborn: breast milk and infant formula. Arch Dis Child. 1989;64:1672–7.CrossRef PubMed PubMedCentral
    27.Adlerberth I. Factors influencing the establishment of the intestinal microbiota in infancy. Nestle Nutr Workshop Ser Pediatr Program. 2008;62:13–29. Discussion 29–33.CrossRef PubMed
    28.Koenig JE, Spor A, Scalfone N, Fricker AD, Stombaugh J, Knight R, et al. Succession of microbial consortia in the developing infant gut microbiome. Proc Natl Acad Sci U S A. 2011;108 Suppl:4578–85.CrossRef
    29.Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486:207–14.CrossRef
    30.Hapfelmeier S, Lawson MAE, Slack E, Kirundi JK, Stoel M, Heikenwalder M, et al. Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses. Science. 2010;328:1705–9.CrossRef PubMed PubMedCentral
    31.Gan XT, Ettinger G, Huang CX, Burton JP, Haist JV, Rajapurohitam V, et al. Probiotic administration attenuates myocardial hypertrophy and heart failure after myocardial infarction in the rat. Circ Heart Fail. 2014;7:491–9.CrossRef PubMed
    32.Tunzi CR, Harper PA, Bar-Oz B, Valore EV, Semple JL, Watson-MacDonell J, et al. Beta-defensin expression in human mammary gland epithelia. Pediatr Res. 2000;48:30–5.CrossRef PubMed
    33.Heikkila MP, Saris PEJ. Inhibition of Staphylococcus aureus by the commensal bacteria of human milk. J Appl Microbiol. 2003;95:471–8.CrossRef PubMed
    34.Shu M, Wang Y, Yu J, Kuo S, Coda A, Jiang Y, et al. Fermentation of Propionibacterium acnes, a commensal bacterium in the human skin microbiome, as skin probiotics against methicillin-resistant Staphylococcus aureus. PLoS One. 2013;8:e55380.CrossRef PubMed PubMedCentral
    35.Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26:2460–1.CrossRef PubMed
    36.Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 2007;35:7188–96.CrossRef PubMed PubMedCentral
    37.Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol. 2005;71:8228–35.CrossRef PubMed PubMedCentral
    38.Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7:335–6.CrossRef PubMed PubMedCentral
    39.Price MN, Dehal PS, Arkin AP. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol. 2009;26:1641–50.CrossRef PubMed PubMedCentral
    40.Edgar RC. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics. 2004;5:113.CrossRef PubMed PubMedCentral
    41.Fernandes AD, Reid JN, Macklaim JM, McMurrough TA, Edgell DR, Gloor GB. Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis. Microbiome. 2014;2:15.CrossRef PubMed PubMedCentral
    42.Aitchson J, Greenacre M. Biplots of compositional data. J R Stat Soc Ser C. 2002;51:375–92.CrossRef
  • 作者单位:Camilla Urbaniak (1) (2)
    Michelle Angelini (3)
    Gregory B. Gloor (4)
    Gregor Reid (1) (2)

    1. Lawson Health Research Institute, 268 Grosvenor Street, London, ON, N6A 4V2, Canada
    2. Department of Microbiology & Immunology, University of Western Ontario, London, ON, N6A 5C1, Canada
    3. Perinatal and Women’s Health, London Health Sciences Centre, London, ON, N6A 4L6, Canada
    4. Department of Biochemistry, University of Western Ontario, London, ON, N6A 5C1, Canada
  • 刊物主题:Medical Microbiology; Bioinformatics; Microbial Ecology; Microbiology; Microbial Genetics and Genomics; Virology;
  • 出版者:BioMed Central
  • ISSN:2049-2618
文摘
Background Human milk is an important source of bacteria for the developing infant and has been shown to influence the bacterial composition of the neonate, which in turn can affect disease risk later in life. Very little is known about what factors shape the human milk microbiome. The goal of the present study was to examine the milk microbiota from a range of women who delivered vaginally or by caesarean (C) section, who gave birth to males or females, at term or preterm.

© 2004-2018 中国地质图书馆版权所有 京ICP备05064691号 京公网安备11010802017129号

地址:北京市海淀区学院路29号 邮编:100083

电话:办公室:(+86 10)66554848;文献借阅、咨询服务、科技查新:66554700