水稻粒形调控基因的互作及其驯化研究进展
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摘要
粒形是水稻重要的品质和产量性状。本文综述了前人对粒形调控基因的克隆,重点阐述了粒形基因间的互作与驯化的研究成果,为水稻粒形基因间互作关系和驯化历史的研究提供一定的方向,也为水稻分子设计改良育种提供一定的参考。
Grain size and shape are important components of the yield and quality for rice.This article reviews the functions of the genes cloned,as well as the interactions between and domestication of the genes.The information was intended to foster further research on the molecular design for breeding new rice varieties.
Grain size and shape are important components of the yield and quality for rice.This article reviews the functions of the genes cloned,as well as the interactions between and domestication of the genes.The information was intended to foster further research on the molecular design for breeding new rice varieties.
引文
[1]徐匡迪,沈国舫.依靠稻作科技创新,推动中国水稻产业发展——在首届国际水稻大会上作的主题报告[J].中国稻米,2002,(6):8-11.
[2]ASHIKARI M,SAKAKIBARA H,LIN S,et al.Cytokinin oxidase regulates rice grain production[J].Science,2005,309(5735):741-745.
[3]UNNEVEHR L.Consumer demand for rice grain quality in Thailand,Indonesia,and the Philippines[M].Manila,Philippines:International Rice Research Institute,1985:45-49.
[4]MULLIEZ P,DARRAS A,DABOUZ R,et al.Broncholithiasis in a case of silicotuberculosis[J].Revue de pneumologie clinique,1990,46(2):85-87.
[5]HUANG R,JIANG L,ZHENG J,et al.Genetic bases of rice grain shape:so many genes,so little known[J].Trends in plant science,2013,18(4):218-226.
[6]朱业宝,郭玉春,梁康迳,等.水稻粒形调控基因的研究进展[J].福建农林大学学报:自然科学版,2015,44(1):1-6.
[7]FAN C,XING Y,MAO H,et al.GS3,a major QTL for grain length and weight and minor QTL for grain width and thickness in rice,encodes a putative transmembrane protein[J].TAG Theoretical and applied genetics Theoretische und angewandte Genetik,2006,112(6):1164-1171.
[8]MAO H,SUN S,YAO J,et al.Linking differential domain functions of the GS3protein to natural variation of grain size in rice[J].Proceedings of the National Academy of Sciences of the United States of America,2010,107(45):19579-19584.
[9]ZHANG X,WANG J,HUANG J,et al.Rare allele of OsPPKL1associated with grain length causes extra-large grain and a significant yield increase in rice[J].Proceedings of the National Academy of Sciences of the United States of America,2012,109(52):21534-21539.
[10]QI P,LIN Y S,SONG X J,et al.The novel quantitative trait locus GL3.1controls rice grain size and yield by regulating Cyclin-T1;3[J].Cell research,2012,22(12):1666-1680.
[11]ISHIMARU K,HIROTSU N,MADOKA Y,et al.Loss of function of the IAA-glucose hydrolase gene TGW6enhances rice grain weight and increases yield[J].Nature genetics,2013,45(6):707-711.
[12]HEANG D,SASSA H.Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice[J].PloS one,2012,7(2):e31325.
[13]HEANG D,SASSA H.An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG[J].Breeding Sci,2012,62(2):133-141.
[14]SONG X J,HUANG W,SHI M,et al.A QTL for rice grain width and weight encodes a previously unknown RING-type E3ubiquitin ligase[J].Nature genetics,2007,39(5):623-630.
[15]SHOMURA A,IZAWA T,EBANA K,et al.Deletion in a gene associated with grain size increased yields during rice domestication[J].Nature genetics,2008,40(8):1023-1028.
[16]WENG J,GU S,WAN X,et al.Isolation and initial characterization of GW5,a major QTL associated with rice grain width and weight[J].Cell research,2008,18(12):1199-1209.
[17]LI Y,FAN C,XING Y,et al.Natural variation in GS5plays an important role in regulating grain size and yield in rice[J].Nature genetics,2011,43(12):1266-1269.
[18]WANG S,WU K,YUAN Q,et al.Control of grain size,shape and quality by OsSPL16in rice[J].Nature genetics,2012,44(8):950-954.
[19]SUN L,LI X,FU Y,et al.GS6,A Member of the GRAS Gene Family,Negatively Regulates Grain Size in Rice[J].Journal of integrative plant biology,2013,55(10):938-949.
[20]LI J,CHU H,ZHANG Y,et al.The rice HGW gene encodes a ubiquitin-associated(UBA)domain protein that regulates heading date and grain weight[J].PloS one,2012,7(3):e34231.
[21]DUAN P,RAO U,ZENG D,et al.SMALL GRAIN 1,which encodes a mitogen-activated protein kinase kinase 4,influences grain size in rice[J].The Plant Journal,2014,(77):547-557.
[22]WANG Y,XIONG G,HU J,et al.Copy number variation at the GL7locus contributes to grain size diversity in rice[J].Nature genetics,2015,47(8):944-948.
[23]WANG S,LI S,LIU Q,et al.The OsSPL16-GW7regulatory module determines grain shape and simultaneously improves rice yield and grain quality[J].Nature genetics,2015,47(8):949-954.
[24]HU J,WANG Y,FANG Y,et al.A Rare Allele of GS2Enhances Grain Size and Grain Yield in Rice[J].Molecular plant,2015,8(10):1455-1465.
[25]GAO F,WANG K,LIU Y,et al.Blocking miR396increases rice yield by shaping inflorescence architecture[J].Nature Plants,2015,DOI:10.1038/NPLANTS,2015,196.
[26]DUAN P G,NI S,WANG J M,et al.Regulation of OsGRF4by OsmiR396controls grain size and yield in rice[J].Nature plants,2015,DOI:10.1038/NPLANTS,2015,203.
[27]CHE R H,TONG H N,SHI B H,et al.Control of grain size and rice yield by GL2-mediated brassinosteroid responses[J].Nature Plants,2015,DOI:10.1038/NPLANTS,2015,195.
[28]LEE C M,PARK J,KIM B,et al.Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters[J].Rice,2015,DOI 10.1186/s12284-015-0066-1.
[29]TAKANO-KAI N,JIANG H,KUBO T,et al.Evolutionary history of GS3,agene conferring grain length in rice[J].Genetics,2009,182(4):1323-1334.
[30]YAN S,ZOU G,LI S,et al.Seed size is determined by the combinations of the genes controlling different seed characteristics in rice[J].TAG Theoretical and applied genetics Theoretische und angewandte Genetik,2011,123(7):1173-1181.
[31]YING J Z,GAO J P,SHAN J X,et al.Dissecting the genetic basis of extremely large grain shape in rice cultivar‘JZ1560’[J].Journal of genetics and genomics,2012,39(7):325-333.
[32]OKA H.Experimental studies on the origin of cultivated rice[J].Genetics,1974,78(1):475-486.
[33]DABROWSKI M,GORECKA B,WITKOWSKI A,et al.Complex hemodynamic analysis of left ventricular systole in hypertrophic cardiopathy-clinical implications[J].Kardiologia polska,1990,33(5):288-302.
[34]NIEDZIOLKA J,ZARDECKI C,DAAB W,et al.Intramedullary osteosynthesis of tibial shaft fractures[J].Chirurgia narzadow ruchu i ortopedia polska,1990,55(4-6):487-493.
[35]MA J,BENNETZEN J L.Rapid recent growth and divergence of rice nuclear genomes[J].Proceedings of the National Academy of Sciences of the United States of America,2004,101(34):12404-124010.
[36]HUANG X,KURATA N,WEI X,et al.A map of rice genome variation reveals the origin of cultivated rice[J].Nature,2012,490(7421):497-501.
[37]KOVACH M J,SWEENEY M T,MCCOUCH S R.New insights into the history of rice domestication[J].Trends Genet,2007,23(11):578-587.
[38]OLSEN K M,CAICEDO A L,POLATO N,et al.Selection under domestication:evidence for a sweep in the rice waxy genomic region[J].Genetics,2006,173(2):975-983.
[39]LI C B,ZHOU A L,SANG T.Rice domestication by reducing shattering[J].Science,2006,311(5769):1936-1939.
[40]LIN Z W,GRIFFITH M E,LI X R,et al.Origin of seed shattering in rice(Oryza sativa L.)[J].Planta,2007,226(1):11-20.
[41]KONISHI S,IZAWA T,LIN S Y,et al.An SNP caused loss of seed shattering during rice domestication[J].Science,2006,312(5778):1392-1396.
[42]FURLL M,DABBAGH M N,SCHAFER M.Subacute butyric acid exposure in cattle.5.Effect on the acid-base equilibrium and protein metabolism in cows[J].Archiv fur experimentelle Veterinarmedizin,1990,44(6):831-839.
[43]LU L,SHAO D,QIU X,et al.Natural variation and artificial selection in four genes determine grain shape in rice[J].The New phytologist,2013,200(4):1269-1280.
[44]YAN C J,YAN S,YANG Y C,et al.Development of genetagged markers for quantitative trait loci underlying rice yield components[J].Euphytica,2009,169(2):215-226.
[45]FJELLSTROM R,MCCLUNG A M,SHANK A R.SSR markers closely linked to the Pi-z locus are useful for selection of blast resistance in a broad array of rice germplasm[J].Mol Breeding,2006,17(2):149-157.
[46]WANG Z,JIA Y,RUTGER J N,et al.Rapid survey for presence of a blast resistance gene Pi-ta in rice cultivars using the dominant DNA markers derived from portions of the Pi-ta gene[J].Plant Breeding,2007,126(1):36-42.
[47]赵天龙,范玉龙,王艺洁,等.白叶枯病抗病基因Xa21与Xa23的聚合育种研究[J].分子植物育种,2015,13(3):513-517.
[48]潘晓飚,陈凯,张强,等.分子标记辅助选育水稻抗白叶枯病和稻瘟病多基因聚合恢复系[J].作物学报,2013,39(9):1582-1593.
[49]刘开雨,卢双楠,裘俊丽,等.培育水稻恢复系抗稻褐飞虱基因导入系和聚合系[J].分子植物育种,2011,9(4):410-417.
[50]李进波,夏明元,戚华雄,等.水稻抗褐飞虱基因Bph14和Bph15的分子标记辅助选择[J].中国农业科学,2006,39(10):2132-2137.
[51]杨梯丰,曾瑞珍,朱海涛,等.水稻粒长基因GS3在聚合育种中的效应[J].分子植物育种,2010,8(1):59-66.
[2]ASHIKARI M,SAKAKIBARA H,LIN S,et al.Cytokinin oxidase regulates rice grain production[J].Science,2005,309(5735):741-745.
[3]UNNEVEHR L.Consumer demand for rice grain quality in Thailand,Indonesia,and the Philippines[M].Manila,Philippines:International Rice Research Institute,1985:45-49.
[4]MULLIEZ P,DARRAS A,DABOUZ R,et al.Broncholithiasis in a case of silicotuberculosis[J].Revue de pneumologie clinique,1990,46(2):85-87.
[5]HUANG R,JIANG L,ZHENG J,et al.Genetic bases of rice grain shape:so many genes,so little known[J].Trends in plant science,2013,18(4):218-226.
[6]朱业宝,郭玉春,梁康迳,等.水稻粒形调控基因的研究进展[J].福建农林大学学报:自然科学版,2015,44(1):1-6.
[7]FAN C,XING Y,MAO H,et al.GS3,a major QTL for grain length and weight and minor QTL for grain width and thickness in rice,encodes a putative transmembrane protein[J].TAG Theoretical and applied genetics Theoretische und angewandte Genetik,2006,112(6):1164-1171.
[8]MAO H,SUN S,YAO J,et al.Linking differential domain functions of the GS3protein to natural variation of grain size in rice[J].Proceedings of the National Academy of Sciences of the United States of America,2010,107(45):19579-19584.
[9]ZHANG X,WANG J,HUANG J,et al.Rare allele of OsPPKL1associated with grain length causes extra-large grain and a significant yield increase in rice[J].Proceedings of the National Academy of Sciences of the United States of America,2012,109(52):21534-21539.
[10]QI P,LIN Y S,SONG X J,et al.The novel quantitative trait locus GL3.1controls rice grain size and yield by regulating Cyclin-T1;3[J].Cell research,2012,22(12):1666-1680.
[11]ISHIMARU K,HIROTSU N,MADOKA Y,et al.Loss of function of the IAA-glucose hydrolase gene TGW6enhances rice grain weight and increases yield[J].Nature genetics,2013,45(6):707-711.
[12]HEANG D,SASSA H.Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice[J].PloS one,2012,7(2):e31325.
[13]HEANG D,SASSA H.An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG[J].Breeding Sci,2012,62(2):133-141.
[14]SONG X J,HUANG W,SHI M,et al.A QTL for rice grain width and weight encodes a previously unknown RING-type E3ubiquitin ligase[J].Nature genetics,2007,39(5):623-630.
[15]SHOMURA A,IZAWA T,EBANA K,et al.Deletion in a gene associated with grain size increased yields during rice domestication[J].Nature genetics,2008,40(8):1023-1028.
[16]WENG J,GU S,WAN X,et al.Isolation and initial characterization of GW5,a major QTL associated with rice grain width and weight[J].Cell research,2008,18(12):1199-1209.
[17]LI Y,FAN C,XING Y,et al.Natural variation in GS5plays an important role in regulating grain size and yield in rice[J].Nature genetics,2011,43(12):1266-1269.
[18]WANG S,WU K,YUAN Q,et al.Control of grain size,shape and quality by OsSPL16in rice[J].Nature genetics,2012,44(8):950-954.
[19]SUN L,LI X,FU Y,et al.GS6,A Member of the GRAS Gene Family,Negatively Regulates Grain Size in Rice[J].Journal of integrative plant biology,2013,55(10):938-949.
[20]LI J,CHU H,ZHANG Y,et al.The rice HGW gene encodes a ubiquitin-associated(UBA)domain protein that regulates heading date and grain weight[J].PloS one,2012,7(3):e34231.
[21]DUAN P,RAO U,ZENG D,et al.SMALL GRAIN 1,which encodes a mitogen-activated protein kinase kinase 4,influences grain size in rice[J].The Plant Journal,2014,(77):547-557.
[22]WANG Y,XIONG G,HU J,et al.Copy number variation at the GL7locus contributes to grain size diversity in rice[J].Nature genetics,2015,47(8):944-948.
[23]WANG S,LI S,LIU Q,et al.The OsSPL16-GW7regulatory module determines grain shape and simultaneously improves rice yield and grain quality[J].Nature genetics,2015,47(8):949-954.
[24]HU J,WANG Y,FANG Y,et al.A Rare Allele of GS2Enhances Grain Size and Grain Yield in Rice[J].Molecular plant,2015,8(10):1455-1465.
[25]GAO F,WANG K,LIU Y,et al.Blocking miR396increases rice yield by shaping inflorescence architecture[J].Nature Plants,2015,DOI:10.1038/NPLANTS,2015,196.
[26]DUAN P G,NI S,WANG J M,et al.Regulation of OsGRF4by OsmiR396controls grain size and yield in rice[J].Nature plants,2015,DOI:10.1038/NPLANTS,2015,203.
[27]CHE R H,TONG H N,SHI B H,et al.Control of grain size and rice yield by GL2-mediated brassinosteroid responses[J].Nature Plants,2015,DOI:10.1038/NPLANTS,2015,195.
[28]LEE C M,PARK J,KIM B,et al.Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters[J].Rice,2015,DOI 10.1186/s12284-015-0066-1.
[29]TAKANO-KAI N,JIANG H,KUBO T,et al.Evolutionary history of GS3,agene conferring grain length in rice[J].Genetics,2009,182(4):1323-1334.
[30]YAN S,ZOU G,LI S,et al.Seed size is determined by the combinations of the genes controlling different seed characteristics in rice[J].TAG Theoretical and applied genetics Theoretische und angewandte Genetik,2011,123(7):1173-1181.
[31]YING J Z,GAO J P,SHAN J X,et al.Dissecting the genetic basis of extremely large grain shape in rice cultivar‘JZ1560’[J].Journal of genetics and genomics,2012,39(7):325-333.
[32]OKA H.Experimental studies on the origin of cultivated rice[J].Genetics,1974,78(1):475-486.
[33]DABROWSKI M,GORECKA B,WITKOWSKI A,et al.Complex hemodynamic analysis of left ventricular systole in hypertrophic cardiopathy-clinical implications[J].Kardiologia polska,1990,33(5):288-302.
[34]NIEDZIOLKA J,ZARDECKI C,DAAB W,et al.Intramedullary osteosynthesis of tibial shaft fractures[J].Chirurgia narzadow ruchu i ortopedia polska,1990,55(4-6):487-493.
[35]MA J,BENNETZEN J L.Rapid recent growth and divergence of rice nuclear genomes[J].Proceedings of the National Academy of Sciences of the United States of America,2004,101(34):12404-124010.
[36]HUANG X,KURATA N,WEI X,et al.A map of rice genome variation reveals the origin of cultivated rice[J].Nature,2012,490(7421):497-501.
[37]KOVACH M J,SWEENEY M T,MCCOUCH S R.New insights into the history of rice domestication[J].Trends Genet,2007,23(11):578-587.
[38]OLSEN K M,CAICEDO A L,POLATO N,et al.Selection under domestication:evidence for a sweep in the rice waxy genomic region[J].Genetics,2006,173(2):975-983.
[39]LI C B,ZHOU A L,SANG T.Rice domestication by reducing shattering[J].Science,2006,311(5769):1936-1939.
[40]LIN Z W,GRIFFITH M E,LI X R,et al.Origin of seed shattering in rice(Oryza sativa L.)[J].Planta,2007,226(1):11-20.
[41]KONISHI S,IZAWA T,LIN S Y,et al.An SNP caused loss of seed shattering during rice domestication[J].Science,2006,312(5778):1392-1396.
[42]FURLL M,DABBAGH M N,SCHAFER M.Subacute butyric acid exposure in cattle.5.Effect on the acid-base equilibrium and protein metabolism in cows[J].Archiv fur experimentelle Veterinarmedizin,1990,44(6):831-839.
[43]LU L,SHAO D,QIU X,et al.Natural variation and artificial selection in four genes determine grain shape in rice[J].The New phytologist,2013,200(4):1269-1280.
[44]YAN C J,YAN S,YANG Y C,et al.Development of genetagged markers for quantitative trait loci underlying rice yield components[J].Euphytica,2009,169(2):215-226.
[45]FJELLSTROM R,MCCLUNG A M,SHANK A R.SSR markers closely linked to the Pi-z locus are useful for selection of blast resistance in a broad array of rice germplasm[J].Mol Breeding,2006,17(2):149-157.
[46]WANG Z,JIA Y,RUTGER J N,et al.Rapid survey for presence of a blast resistance gene Pi-ta in rice cultivars using the dominant DNA markers derived from portions of the Pi-ta gene[J].Plant Breeding,2007,126(1):36-42.
[47]赵天龙,范玉龙,王艺洁,等.白叶枯病抗病基因Xa21与Xa23的聚合育种研究[J].分子植物育种,2015,13(3):513-517.
[48]潘晓飚,陈凯,张强,等.分子标记辅助选育水稻抗白叶枯病和稻瘟病多基因聚合恢复系[J].作物学报,2013,39(9):1582-1593.
[49]刘开雨,卢双楠,裘俊丽,等.培育水稻恢复系抗稻褐飞虱基因导入系和聚合系[J].分子植物育种,2011,9(4):410-417.
[50]李进波,夏明元,戚华雄,等.水稻抗褐飞虱基因Bph14和Bph15的分子标记辅助选择[J].中国农业科学,2006,39(10):2132-2137.
[51]杨梯丰,曾瑞珍,朱海涛,等.水稻粒长基因GS3在聚合育种中的效应[J].分子植物育种,2010,8(1):59-66.