Developing a taxonomic identification system of Phytophthora species based on microsatellites

详细信息    查看全文

• 作者：Johanna del Castillo-Mú ; nera^a ; Martha Cá ; rdenas^a ; André ; s Pinzó ; n^a ; Adriana Castañ ; eda^b ; Adriana J. Bernal^a ; Silvia Restrepo^a ; ^{srestrep@uniandes.edu.co}
• 关键词：Identification system ; Phytophthora ; Microsatellites ; Simple sequence repeats
• 刊名：Revista Iberoamericana de Micolog¨ªa
• 出版年：2013
• 出版时间：April-June, 2013
• 年：2013
• 卷：30
• 期：2
• 页码：88-95
• 全文大小：1107 K

文摘

Background

Phytophthora is the most important genus of the Oomycete plant pathogens. Nowadays, there are 117 described species in this genus, most of them being primary invaders of plant tissues. The different species are causal agents of diseases in a wide range of crops and plants in natural environments. In order to develop control strategies against Phytophthoraspecies, it is important to know the biology, ecology and evolutionary processes of these important pathogens.

Aims

The aim of this study was to propose and validate a low cost identification system for Phytophthora species based on a set of polymorphic microsatellite (SSRs) markers.

Methods

Thirty-three isolates representing Phytophthora infestans, Phytophthora andina, Phytophthora sojae, Phytophthora cryptogea, Phytophthora nicotianae, Phytophthora capsici and Phytophthora cinnamomi species were obtained, and 13 SSRs were selected as potentially transferable markers between these species. Amplification conditions, including annealing temperatures, were standardized for several markers.

Results

A subset of these markers amplified in all species, showing species-specific alleles.

Conclusions

The adaptability and impact of the identification system in Colombia, an Andean agricultural country where different Phytophthora species co-exist in the same or in several hosts grown together, are discussed.