An EMR data cube is a complex of EMR statistics and has great potential for medical researches. There is a need to anonymize EMRs because they may lead to privacy violations. Various anonymization methods perform differently in terms of the efficiency and effectiveness of the data cube. This study assesses privacy-preserving EMR data cubes anonymized by the various methods. Our findings help to adopt the best anonymization method with consideration for the EMR analysis environment and goal of the EMR analysis.