The use of antibiotic-resistance genes as selectable
markers in transgenic organismsis coming under increased scrutiny, for fear that they may spread to human pathogens,thereby reducing the effectiveness of antibiotic therapy. A current
Pseudomonasfluorescens protein expression system uses a tetracycline resistance gene (
tetR/tetA)to maintain an expression plasmid under control of a repressible promoter and akanamycin resistance gene (
kanR) to maintain a plasmid carrying a repressor gene.We investigated using auxotrophic
markers to replace these two antibiotic resistancegenes:
pyrF (encoding orotidine-5'-phosphate decarboxylase) in place of
tetR/tetA and
proC (encoding pyrroline-5-carboxylate reductase) in place of
kanR, complementingtheir respective precise chromosomal deletions created by allele exchange using asuicide vector carrying
pyrF as a counterselectable
marker. The resulting strains,devoid of antibiotic-resistance genes, were shown to achieve high productivity ofnitrilase and thermostable
-amylase equal to that of the former antibiotic-resistantproduction host. The production plasmids were stable. The
pyrF (uracil-dependent)background of the production host strain also allows us to sequentially alter the genometo incorporate other desired genomic changes, deletions, or insertions using 5'-fluoroorotic acid
counterselection, restoring the selectable
marker after each step.