Network reduction in metabolic pathway analysis: Elucidation of the key pathways involved in the photoautotrophic growth of the green alga Chlamydomonas reinhardtii

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• 作者：Marco Rü ; gen^a ; Alexander Bockmayr^a ; Jack Legrand^b ; Guillaume Cogne^b ; ^{Guillaume.Cogne@univ-nantes.fr}
• 关键词：Metabolic pathway analysis ; Photoautotrophic metabolism ; Chlamydomonas reinhardtii ; Cellular energetics
• 刊名：Metabolic Engineering
• 出版年：2012
• 期刊代码：98_10967176
• 类别：ce
• 出版时间：July, 2012
• 卷：14
• 期：4
• 页码：458-467
• 文件大小：1165 K

摘要

Metabolic pathway analysis aims at discovering and analyzing meaningful routes and their interactions in metabolic networks. A major difficulty in applying this technique lies in the decomposition of metabolic flux distributions into elementary mode or extreme pathway activity patterns, which in general is not unique. We propose a network reduction approach based on the decomposition of a set of flux vectors representing adaptive microbial metabolic behavior in bioreactors into a minimal set of shared pathways. Several optimality criteria from the literature were compared in order to select the most appropriate objective function. We further analyze photoautotrophic metabolism of the green alga Chlamydomonas reinhardtii growing in a photobioreactor under maximal growth rate conditions. Key pathways involved in its adaptive metabolic response to changes in light influx are identified and discussed using an energetic approach.