Bioinformatics evidence for the transfer of mycosporine-like amino acid core (4-deoxygadusol) synthesizing gene from cyanobacteria to dinoflagellates and an attempt to mutate the same gene (YP_324358) in Anabaena variabilis PCC 7937

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• 作者：Shailendra P. Singh^a ; ¹ ; Donat-P. Hä ; der^a ; ² ; Rajeshwar P. Sinha^b ; ^{r.p.sinha@gmx.net}
• 关键词：MAAs ; mycosporine-like amino acids ; PAR ; photosynthetically active radiation ; UV-B ; ultraviolet-B ; LGT ; lateral gene transfer ; DHQ ; 3-dehydroquinate ; PCR ; polymerase chain reaction ; DCMU ; 3-(3 ; 4-dichlorophenyl)-1 ; 1-dimethylurea
• 刊名：Gene
• 出版年：2012
• 期刊代码：73_03781119
• 类别：bio
• 出版时间：1 June, 2012
• 卷：500
• 期：2
• 页码：155-163
• 文件大小：2332 K

摘要

We have identified a homologue of 4-deoxygadusol (core of mycosporine-like amino acids) synthesizing gene (ZP_05036788) from Synechococcus sp. PCC 7335 that was found to have additional functionally unknown N-terminal domain similar to homologues from dinoflagellates based on the ClustalW analysis. Phylogenetic analysis revealed that Synechococcus sp. (ZP_05036788) makes a clade together with dinoflagellates and was closest to the Oxyrrhis marina. This study shows for the first time that N-terminal additional sequences that possess upstream plastid targeting sequence in Heterocapsa triquetra and Karlodinium micrum were already evolved in cyanobacteria, and plastid targeting sequence were evolved later in dinoflagellates after divergence from chloroplast lacking Oxyrrhis marina. Thus, MAAs synthesizing genes were transferred from cyanobacteria to dinoflagellates and possibly Synechococcus sp. PCC 7335 acted as a donor during lateral gene transfer event. In addition, we also tried to mutate 4-deoxygadusol synthesizing gene (YP_324358) of Anabaena variabilis PCC 7937 by homologous recombination, however, all approaches to get complete segregation of the mutants from the wild-type were unsuccessful, showing the essentiality of YP_324358 for A. variabilis PCC 7937.