稻曲病侵染过程以及水稻响应稻曲菌侵染的转录组变化
|
摘要
稻曲病是近年流行的一种发生于水稻穗部的真菌性病害。自上世纪七十年代以来,随着优质稻的逐渐推广和化肥的大量施用,稻曲病在世界主要稻谷产区迅速蔓延,甚至有些地区已经取代稻瘟病和白叶枯病成为首要病害。稻曲病不仅严重影响水稻产量,其散发的孢子还污染环境,影响稻米品质,威胁人类身体健康。目前有关稻曲病的研究主要集中在病原菌生物学性状观察、群体结构、遗传转化、毒素鉴定以及水稻抗性资源的筛选上,而对于稻曲菌侵染过程中水稻-病原菌互作的分子生物学研究还没有报道。本研究中,我们从细胞学水平对稻曲菌侵染水稻过程进行了观察,并且用数字表达谱对病原菌侵染水稻时水稻转录组变化情况进行了监测,发现了一些水稻-病原菌互作的代谢途径和受稻曲病特异调控的基因。主要结果如下：
1、胚芽鞘是水稻营养生长期侵染的一个重要部位。将催芽后的水稻和稻曲菌分生孢子悬浮液共培养,十天后通过显微镜观察可在胚芽鞘内层细胞发现明显的侵染痕迹：部分宿主细胞被稻曲菌膨大孢子填充,形成一条条孢子带,有的孢子萌发成菌丝沿着细胞间隙蔓延,在适当部位刺穿细胞壁进而在水稻细胞中生长,说明根部可能是稻曲病初期侵染途径之
2、稻曲菌对水稻小穗的侵染是一个多器官连续侵染的过程,根据侵染部位的不同我们将其分成三个时期。扫描电子显微镜观察发现稻曲菌首先在雌蕊的花柱上形成侵染钉和侵染垫,大量菌丝缠绕在柱头上,我们称其为时期1(S1)；随之菌丝开始缠绕雄蕊基部,并形成特殊的类似于“脚”的结构向上攀爬,此时为时期2(S2)；最后菌丝包裹整个花器官,形成白色的花器官-菌丝复合体,进一步解剖发现稻曲菌从药隔部位进入药室,在药室内部产生大量的分生孢子,并导致部分花粉粒空瘪化,为时期3(S3)。
3、连续两年(2010-2011)的转录组测序表明,S1,S2,S3时期分别检测到423、879和1620个差异表达基因。排除褐飞虱、钻心虫、稻瘟病、条纹叶枯病等生物胁迫和早、盐、热、冷等非生物胁迫共同诱导的表达基因,在三个时期分别得到126、304和580个稻曲菌特异调控基因,其中,有53个上调基因和60个下调基因在三个时期均检测到,我们称为核心调控基因。
4、对核心调控基因启动子区域序列分析发现,有9个保守性调控元件明显富集,其中上调部分有六个,包括两个转录调节元件(TTATTT、YTCANTYY),两个WRKY结合元件(TTGAC、TGACT),一个MYB结合元件(TGTCA),一个Dof结合元件(TAAAG),其中,WRKY、MYB和Dof是典型的胁迫相关转录因子。下调部分有三个,包括两个ABA调节元件(CANNTG、CATGCA),一个钙调素结合元件(VCGCGB),ABA一般认为对非生物胁迫是正调控因子,对生物胁迫是负调控因子；钙调素是植物体内第二信使重要组成成员,对于维护植物体正常的生理活动代谢有重要作用。
5、对稻曲菌特异调控基因GO enrich分析结果表明,有大量的GO类别被显著富集。其中“Cell Part"部分有4个,‘"Molecular Functions"部分有55个,"Biological Process"部分有52个。进一步分析发现在稻曲菌侵染初期上调部分主要是一些蛋白修饰方面的类别富集,下调部分主要是一些碳水化合物代谢类别富集,这说明稻曲菌侵染初期就激活了水稻的防御系统,并且操纵宿主碳水化合物代谢；随着病情的发展,上调部分一些与细胞死亡相关的代谢被富集,下调部分中一些离子转运相关的类别被富集；进入S3期,与花粉识别特异相关的类别在上调部分富集,而下调部分主要是一些细胞壁合成代谢类富集,这也与我们观察到的在这个时期病原菌通过破坏药隔结构进入药室,并且产生大量分生孢子吸附与花粉粒表面这一现象相吻合。
Rice false smut is a typical fungal disease occurred in rice spikelets caused by Ustilaginoidea virens. In the last decades, with popularization of good rice cultivars and intensive application of nitrogen fertilizer, rice false smut is rapidly spreading around rice-growing regions worldwidely. In some areas, it has replaced rice blast and bacterial blight and becames a primary disease. Aparts causing severe yield losses, the toxins produced by false smut can greatly inhibit cell division which threatens to people life. However, the infection only occurs on booting spikelet strongly hinders the reaserch go on, thus the results mainly focon on the pathogen diversity, infection process, heredity, toxity and damage to rice production up to known. The infection process and molecular interaction between rice and pathogen are still poorly understood. In this study, we observed the infection process after inoculation and analyzed the expression profile of a spikelet infected with U. virens using digital gene expression tag profiling (DGE). Some interesting results were obtained as follow.
1. Coleoptiles can be infected by U. virens. After inoculation rice bud with coindia, we obesved coleoptiles can be infected by pathogen at10day post inoculation (dpi). Several host cell were filled with swell spores and formed "spore stripes". Some spore germinated hyphe, grew alone with intercellular cell and entered host cell by directly pierced into cell wall. These results showed that false smut might be a systemic disease, and fungus carried by seed might be the source of primary infection.
2. Cytological observation showed the early development of false smut took place in a stepwise invasion process and could be divided into three distinctive stages based on morphology of the infected floral organs and tissues. Initially, the two pistils in the infected spikelet were separate and only latter intertwined together by the hyphae, this phase here was named stage S1. As the fungi reproduced, mass of hyphae surrounded pistils and formed a penetration peg on column. Then, visible mycelial mass reached at the bottom of anthers, hyphae climbed up the anther using some special organs like "feet" and "feelers", this stage was here named stage S2. As the disease continued to develop, the whole floral organ became surrounded by mycelium, forming a floral-hyphae complex. Finally, the hyphae entered the anther chambers by piercing through anther wall at the weak connectivum, this stage was here named stage S3. Cytological observation showed mass of conidia wrapped on the surfaces of pollen grains and innate anther wall, and some of pollen became collapsed. Carbohydrate analysis showed the content of soluble sugar increased significantly whereas starch content significantly reduced. This was further confirmed by the decrease of expression level of starch synthase and increase of the starch-degrading enzyme glycosyl hydrolase. In addition, two sugar transporter members were also highly induced in the present study, hinting stamen is an important tissue for U. virens infection and reproduction.
3. By integrative two years (2010-2011) DGE data, totally423,879and1620DE genes across both years were monitored in S1, S2and S3, respectively. To obtain the genes specially regulated by false smut, we compared our data to that of the openly available biotic and abiotic databases to exclude genes generally regulated by other abiotic and biotic factors by bioinformatics.126(58up,68down),304(136up,168down), and580(243up,373down) expressional genes which be considered specially regulated by the invasion of U. virens were detected in S1, S2, and S3respectively. Of which,53and68core genes were detected among three infection stages in up-and down-regulation part.
4. Analysis of the highly conserved c/s-acting elements between core up-and down-regulation genes, we obtained9elements (6up and3down). In up parts, YTCANTYY and TTATTT are basic transcription initiation elements for genes expression, TTGAC, TGACT for W-box, TGTCA for Myb and TAAAG for Dof were typically stress related motifs. In down parts, two (CANNTG and CATGCA) out of three motifs were detected for abscisic acid (ABA)-response. Previous studies showed ABA is usually a positive regulator in response to abiotic stress, whereas a negative one in response to biotic stress. CGCG box is regulated by calmodulin. As an important second message, calmodulin play a key role in plant development.
5. GO analysis showed mass of caterious differently enriched. Of which,4categories in "Cell part",55categories in "Molecular functions",52categories in "Biological process". Further analysis showed in the beginning infection,"Phosphorylation" and "Protein modification" were greatly activated whereas "Carbohydrate metabolic process" was repressed. With disease development, categories as "Cell death" was widely up-regulated whereas "Ion transport" ere widely repressed at stage S2. During final infection (S3),"Cell recognition" was enriched in up-regulation and "Cell wall metabolism" was enriched in down-regulation part, which was in accordance with the cytological observation that the pathogen hyphae intertwined with microspores and great amount of conidia produced in the anther chambers.
1、胚芽鞘是水稻营养生长期侵染的一个重要部位。将催芽后的水稻和稻曲菌分生孢子悬浮液共培养,十天后通过显微镜观察可在胚芽鞘内层细胞发现明显的侵染痕迹：部分宿主细胞被稻曲菌膨大孢子填充,形成一条条孢子带,有的孢子萌发成菌丝沿着细胞间隙蔓延,在适当部位刺穿细胞壁进而在水稻细胞中生长,说明根部可能是稻曲病初期侵染途径之
2、稻曲菌对水稻小穗的侵染是一个多器官连续侵染的过程,根据侵染部位的不同我们将其分成三个时期。扫描电子显微镜观察发现稻曲菌首先在雌蕊的花柱上形成侵染钉和侵染垫,大量菌丝缠绕在柱头上,我们称其为时期1(S1)；随之菌丝开始缠绕雄蕊基部,并形成特殊的类似于“脚”的结构向上攀爬,此时为时期2(S2)；最后菌丝包裹整个花器官,形成白色的花器官-菌丝复合体,进一步解剖发现稻曲菌从药隔部位进入药室,在药室内部产生大量的分生孢子,并导致部分花粉粒空瘪化,为时期3(S3)。
3、连续两年(2010-2011)的转录组测序表明,S1,S2,S3时期分别检测到423、879和1620个差异表达基因。排除褐飞虱、钻心虫、稻瘟病、条纹叶枯病等生物胁迫和早、盐、热、冷等非生物胁迫共同诱导的表达基因,在三个时期分别得到126、304和580个稻曲菌特异调控基因,其中,有53个上调基因和60个下调基因在三个时期均检测到,我们称为核心调控基因。
4、对核心调控基因启动子区域序列分析发现,有9个保守性调控元件明显富集,其中上调部分有六个,包括两个转录调节元件(TTATTT、YTCANTYY),两个WRKY结合元件(TTGAC、TGACT),一个MYB结合元件(TGTCA),一个Dof结合元件(TAAAG),其中,WRKY、MYB和Dof是典型的胁迫相关转录因子。下调部分有三个,包括两个ABA调节元件(CANNTG、CATGCA),一个钙调素结合元件(VCGCGB),ABA一般认为对非生物胁迫是正调控因子,对生物胁迫是负调控因子；钙调素是植物体内第二信使重要组成成员,对于维护植物体正常的生理活动代谢有重要作用。
5、对稻曲菌特异调控基因GO enrich分析结果表明,有大量的GO类别被显著富集。其中“Cell Part"部分有4个,‘"Molecular Functions"部分有55个,"Biological Process"部分有52个。进一步分析发现在稻曲菌侵染初期上调部分主要是一些蛋白修饰方面的类别富集,下调部分主要是一些碳水化合物代谢类别富集,这说明稻曲菌侵染初期就激活了水稻的防御系统,并且操纵宿主碳水化合物代谢；随着病情的发展,上调部分一些与细胞死亡相关的代谢被富集,下调部分中一些离子转运相关的类别被富集；进入S3期,与花粉识别特异相关的类别在上调部分富集,而下调部分主要是一些细胞壁合成代谢类富集,这也与我们观察到的在这个时期病原菌通过破坏药隔结构进入药室,并且产生大量分生孢子吸附与花粉粒表面这一现象相吻合。
Rice false smut is a typical fungal disease occurred in rice spikelets caused by Ustilaginoidea virens. In the last decades, with popularization of good rice cultivars and intensive application of nitrogen fertilizer, rice false smut is rapidly spreading around rice-growing regions worldwidely. In some areas, it has replaced rice blast and bacterial blight and becames a primary disease. Aparts causing severe yield losses, the toxins produced by false smut can greatly inhibit cell division which threatens to people life. However, the infection only occurs on booting spikelet strongly hinders the reaserch go on, thus the results mainly focon on the pathogen diversity, infection process, heredity, toxity and damage to rice production up to known. The infection process and molecular interaction between rice and pathogen are still poorly understood. In this study, we observed the infection process after inoculation and analyzed the expression profile of a spikelet infected with U. virens using digital gene expression tag profiling (DGE). Some interesting results were obtained as follow.
1. Coleoptiles can be infected by U. virens. After inoculation rice bud with coindia, we obesved coleoptiles can be infected by pathogen at10day post inoculation (dpi). Several host cell were filled with swell spores and formed "spore stripes". Some spore germinated hyphe, grew alone with intercellular cell and entered host cell by directly pierced into cell wall. These results showed that false smut might be a systemic disease, and fungus carried by seed might be the source of primary infection.
2. Cytological observation showed the early development of false smut took place in a stepwise invasion process and could be divided into three distinctive stages based on morphology of the infected floral organs and tissues. Initially, the two pistils in the infected spikelet were separate and only latter intertwined together by the hyphae, this phase here was named stage S1. As the fungi reproduced, mass of hyphae surrounded pistils and formed a penetration peg on column. Then, visible mycelial mass reached at the bottom of anthers, hyphae climbed up the anther using some special organs like "feet" and "feelers", this stage was here named stage S2. As the disease continued to develop, the whole floral organ became surrounded by mycelium, forming a floral-hyphae complex. Finally, the hyphae entered the anther chambers by piercing through anther wall at the weak connectivum, this stage was here named stage S3. Cytological observation showed mass of conidia wrapped on the surfaces of pollen grains and innate anther wall, and some of pollen became collapsed. Carbohydrate analysis showed the content of soluble sugar increased significantly whereas starch content significantly reduced. This was further confirmed by the decrease of expression level of starch synthase and increase of the starch-degrading enzyme glycosyl hydrolase. In addition, two sugar transporter members were also highly induced in the present study, hinting stamen is an important tissue for U. virens infection and reproduction.
3. By integrative two years (2010-2011) DGE data, totally423,879and1620DE genes across both years were monitored in S1, S2and S3, respectively. To obtain the genes specially regulated by false smut, we compared our data to that of the openly available biotic and abiotic databases to exclude genes generally regulated by other abiotic and biotic factors by bioinformatics.126(58up,68down),304(136up,168down), and580(243up,373down) expressional genes which be considered specially regulated by the invasion of U. virens were detected in S1, S2, and S3respectively. Of which,53and68core genes were detected among three infection stages in up-and down-regulation part.
4. Analysis of the highly conserved c/s-acting elements between core up-and down-regulation genes, we obtained9elements (6up and3down). In up parts, YTCANTYY and TTATTT are basic transcription initiation elements for genes expression, TTGAC, TGACT for W-box, TGTCA for Myb and TAAAG for Dof were typically stress related motifs. In down parts, two (CANNTG and CATGCA) out of three motifs were detected for abscisic acid (ABA)-response. Previous studies showed ABA is usually a positive regulator in response to abiotic stress, whereas a negative one in response to biotic stress. CGCG box is regulated by calmodulin. As an important second message, calmodulin play a key role in plant development.
5. GO analysis showed mass of caterious differently enriched. Of which,4categories in "Cell part",55categories in "Molecular functions",52categories in "Biological process". Further analysis showed in the beginning infection,"Phosphorylation" and "Protein modification" were greatly activated whereas "Carbohydrate metabolic process" was repressed. With disease development, categories as "Cell death" was widely up-regulated whereas "Ion transport" ere widely repressed at stage S2. During final infection (S3),"Cell recognition" was enriched in up-regulation and "Cell wall metabolism" was enriched in down-regulation part, which was in accordance with the cytological observation that the pathogen hyphae intertwined with microspores and great amount of conidia produced in the anther chambers.
引文
陈永坚,肖炎农,赵永静.稻曲病菌越冬厚垣孢子萌发及其侵染力的研究[J].植物保护学报,1995,22(2)：102-106.
董海涛,钱钧,徐国军.稻曲病对粳稻产量损失的测定[J].浙江农业科学,2003,02：85-86.
樊荣辉,王永强,刘兵,张敬泽,王洪凯,胡东维.稻绿核菌无性孢子形成过程及厚垣孢子萌发率测定[J].菌物学报,2010,29(2)：188-192.
方先文,汤陵华,王艳平.水稻稻曲病抗性遗传机制[J].江苏农业学报,2008,24(6)：762-765.
高俊,奚本贵,吴永方,吴庭友,王德江,赵阳.稻曲病产量损失测定及经济阈值初探[J].江苏农业科学,2001,03：36-43.
黄峰.粳稻云引受稻瘟病菌诱导的基因表达谱分析[D].福州：福建师范大学硕士论文,2012：
胡玉兰,王乃奇,吴怀刚.凤阳县水稻稻曲病大发生的原因及防治对策[J].现代农业科技,2012,8：185.
韩永峰,杨倩,张胜伟,孙大业,孙颖.植物类受体激酶CrRLK1-L亚家族[J].生物化学与生物物理进展,2011,38(10)：891-899.
祭芳,曹欢,徐剑宏,殷宪超,史建荣.高效液相色谱-串联质谱法定量检测稻谷中的稻曲病菌毒素A和D[J].中国水稻科学,2012,26(2)：246-250.
姜志强,姜志超.稻曲病病粒数对水稻产量影响分析[J].北方水稻,2008,39(3)：53-54.
李小娟,刘二明,肖启明,刘年喜,王金辉,谭小平,郑和斌.水稻对稻曲病抗性的分级及相应级别的产量损失[J].湖南农业大学学报(自然科学版),2011,37(3)：275-279.
李静,代明武,赵红梅.施肥对稻曲病发生率的影响[J].新农业,2007,7：47.
李阳.稻曲病菌的生物学、侵染特性及遗传多样性研究[D].武汉：华中农业大学硕士论文,2007：
李卫平,王洪凯,林福呈.稻曲病菌厚垣孢子的萌发特性[J].浙江农业学报,2008,20(4)：278-281.
刘丙新.水稻白叶枯病菌胁迫下的全基因组表达谱分析及水稻恢复系的白叶枯病抗性改良[D].北京：中国农业科学院硕士论文,2010：
卢代华,毛建辉,王平,何忠全,陈放.籼型杂交水稻对稻曲病的田间抗性差异[J],2008,35(4)：289-294.
陆凡,陈志谊,陈毓苓,史阿宝,王法明,张宏图.稻曲病菌的生物学特性及其侵染循环中某些未确定要点的研究[J].江苏农业学报,1996,12(4)：35-40.
吕博,杨丹,贾切,罗汉钢,黄俊斌.基于PCR技术的稻曲病菌侵染特性研究[A].见：中国植物病理学会.2009年学术年会论文集[C].中国农业科学技术出版社.2009年：
缪巧明.稻曲病的侵染途径研究[J].云南农业大学学报,1992,19(1)：40-42.
潘勋,啜惠娥.稻曲病发生程度与气象因素的关系研究[J].河北农垦科技,1997,2：9-12.
潘晓光,段承俐,萧凤回.植物内流型钾离子通道的研究进展[J].云南农业大学学报,2008,23(2)：238-244.
秦玉金,刘学儒,杨进.扬州市近年稻曲病发生加重原因分析及防治对策[J].上海农业科技,2012,3：137-138.
孙梓健,韦静宜,王小住,宋明,汤青林,王志敏,任雪松.结球甘蓝花粉钙调素基因的克隆与表达分析[J].园艺学报,2012,39(4)：677-686.
谭小平,宋建伟,刘二明,刘年喜,王金辉,肖启明.湖南稻曲病菌群体遗传多样性分析[J].湖南农业大学学报(自然科学版),2008,34(6)：694-697.
王国良.稻曲病菌厚垣孢子侵染时期和侵染途径的研究[J].植物保护学报,1996,19(2)：97-100.
王金华,陈越华.湖南省2004年中、晚稻稻曲病流行情况调查[J].中国植保导刊,2005(8)：14-15.
王梅,周永力,赵震宇,郭庆元,谢学文.稻曲病发病程度与产量的相关性[J].新疆农业大学学报,2007,30(04)：76-79.
王疏,白元俊,刘晓舟.稻曲病接种菌源及接种方法的研究[J].辽宁农业科学,1996,(1)：33-35.
汪志伟,卢方林,王克贵.稻曲病的发生规律及综合防控技术[J].植物医生,2011,24(1)：6-7.
徐建龙,薛庆中,罗利军,黎志康.近等基因导入系定位水稻抗稻曲病数量性状位点的研究初报[J].浙江农业学报,2002,14(1)：14-19.
姚琳,叶慧丽,胡容平,吴江,卢代华,毛建辉,何忠全.稻曲病侵染机制的初步研究[J].西南农业学报,2012,25(04)：1273-1276.
杨秀娟,王舒婷,阮宏椿,石妞妞,甘林,陈福如.水稻稻曲病室内人工接种技术[J].植物保护学报,2011,38(5)：395-400.
余育超.成都：全球水稻微核心种质抗病基因同源序列多态性及与稻曲病抗性关联的分析[D].四川师范大学硕士学位论文,2012：
张舒,常向前,陈其志,吕亮,杨小林,喻大昭,黄俊斌,李阳,罗汉刚,张求东,王利兵,史艳云.湖北省稻曲病菌Usitilaginoidea vriens遗传多样性的初步分析[A].见：植物保护与现代农业-中国植物保护学会.2007年学术年会论文集[C].中国农业科学技术出版社,2007：
张舒,陈其志,吕亮.湖北省水稻部分主栽品种对稻曲病的抗性鉴定[J].安徽农学报,2006,12(5)：76-78.
张君成,张炳欣,陈志谊,刘永锋,陆凡.稻曲病菌分生孢子的生物学研究[J].植物病理学报,2003,33(1)：44-47.
张震,王教瑜,杜新法,柴荣耀,毛雪琴,邱海萍,孙国昌.稻曲病菌cDNA文库的构建[J].植物病理学报,2008,38(5)：462-467.
张震,杜新法,柴荣耀,毛雪琴,邱海萍,王艳丽,王教瑜,孙国昌.根癌农杆菌介导遗传转化稻曲病菌[J].中国水稻科学,2006,20(4)：440-442.
左广胜,冉西京,杜生茂.稻曲病菌初侵染源研究[J].中国农学通报,1996,2(5)：7-8.
Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. The Plant Cell,2003,15(1):63-78.
Allen AM, Thorogood CJ, Hegarty MJ, Lexer C, Hiscock SJ. Pollen-pistil interactions and self-incompatibility in the Asteraceae:new insights from studies of Senecio squalidus (Oxford ragwort). Annals of Botany,2011,108(4):687-98.
An C, Mou Z. The function of the Mediator complex in plant immunity. Plant Signaling & Behavior,2013,8(3):doi:pii:e23182.
Ashizawa T, Takahashi M, Arai M, Arie T. Rice false smut pathogen, Ustilaginoidea virens, invades through small gap at the apex of a rice spikelet before heading. Journal of General Plant Pathology,2012,78:255-259.
Atia MMM. Rice false smut (Ustilaginoidea virens) in Egypt. Journal of Plant Diseases and Protection,2004,111:71-82.
Atkins JG, Robert AL, Adair CR, Goto K, Kozaka T, Yanagida R, Yamada M, Matsumoto S. An international set of rice varieties for differentiating races of Piricularia oryzae. Phytopathology, 1967,57:297-301.
Badri DV, De-la-Pena C, Lei Z, Manter DK, Chaparro JM, Guimaraes RL, Sumner LW, Vivanco JM. Root secreted metabolites and proteins are involved in the early events of plant-plant recognition prior to competition. PLoS One,2012,7(10):e46640.
Baek KH, Choi D. Roles of plant proteases in pathogen defense. Plant Pathology Journal,2008,24: 367-374.
Bagnaresi P, Biselli C, Orru L, Urso S, Crispino L, Abbruscato P, Piffanelli P, Lupotto E, Cattivelli L, Vale G. Comparative transcriptome profiling of the early response to Magnaporthe oryzae in durable resistant vs susceptible rice (Oryza sativa L.) genotypes. PLoS One,2012,7(12): e51609.
Barone AD, Beecher JE, Bury P, Chen C, Doede T, Fidanza JA, McGall GH. Photolithographic synthesis of high-density oligonucleotide probe arrays. Nucleotides Nucleic Acids,2001,20: 525-531.
Bart PHJ, Thomma, Thorsten, Nurnberger, Matthieu HAJ. Joosten, Of PAMPs and Effectors:The Blurred PTI-ETI Dichotomy. The Plant Cell,2011,23(1):4-15.
Belkhadir Y, Nimchuk Z, Hubert DA, Mackey D, Dangl JL. Arabidopsis RIN4 negatively regulates disease resistance mediated by RPS2 and RPM1 downstream or independent of the NDR1 signal modulator and is not required for the virulence functions of bacterial type III effectors AvrRpt2 or AvrRpm1. The Plant Cell,2004,16(10):2822-35.
Bhagat AP, Prasda Y, Yaday BP. Effect of environment on flase smut infection rice. Journal of Applied Biology,1993,3(1-2):56-59.
Boller T, Felix G. A renaissance of elicitors:perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annual Review of Plant Biology,2009,60: 379-406.
Bordiec S, Paquis S, Lacroix H, Dhondt S, Ait Barka E, Kauffmann S, Jeandet P, Mazeyrat-Gourbeyre F, Clement C, Baillieul F, Dorey S. Comparative analysis of defence responses induced by the endophytic plant growth-promoting rhizobacterium Burkholderia phytofirmans strain PsJN and the non-host bacterium Pseudomonas syringae pv. pisi in grapevine cell suspensions. Journal of Experimental Botany,2011,62(2):595-603.
Bouche N, Fromm H. GABA in plants:just a metabolite? Trends in Plant Science,2004,9: 110-115.
Cai X, Zhang Y, Zhang C, Zhang T, Hu T, Ye J, Zhang J, Wang T, Li H, Ye Z. Genome-wide Analysis of Plant-specific Dof Transcription Factor Family in Tomato. Journal of Integrative Plant Biology,2013,5:doi:10.1111/jipb.12043.
Canonne J, Marino D, Jauneau A, Pouzet C, Briere C, Roby D, Rivas S. The Xanthomonas type III effector XopD targets the Arabidopsis transcription factor MYB30 to suppress plant defense. The Plant Cell,2011,23(9):3498-511.
Chagne D, Lin-Wang K, Espley RV, Volz RK, How NM, Rouse S, Brendolise C, Carlisle CM, Kumar S, De Silva N, Micheletti D, McGhie T, Crowhurst RN, Storey RD, Velasco R, Hellens RP, Gardiner SE, Allan AC. An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes. Plant Physiology,2013,161(1):225-39.
Chen LQ, Hou BH, Lalonde S, Takanaga H, Hartung ML, Qu XQ, Guo WJ, Kim JG, Underwood W, Chaudhuri B, Chermak D, Antony G, White FF, Somerville SC, Mudgett MB, Frommer WB. 2010. Sugar transporters for intercellular exchange and nutrition of pathogens. Nature,468, 527-532.
Chen X, Chern M, Canlas PE, Ruan D, Jiang C, Ronald PC. An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity. Proceedings of the National Academy of Sciences,2010,107(17):8029-34.
Cheng WH, Endo A, Zhou L, Penney J, Chen HC, Arroyo A, Leon P, Nambara E, Asami T, Seo M, Koshiba T, Sheen J. A unique short-chain dehydrogenase/reductase in Arabidopsis glucose signaling and abscisic acid biosynthesis and functions. The Plant Cell,2002,14(11):2723-43.
Chi Y, Yang Y, Zhou Y, Zhou J, Fan B, Yu JQ, Chen Z. Protein-Protein Interactions in the Regulation of WRKY Transcription Factors. Molecular Plant,2013,6(2):287-300.
Chou S, Krasileva KV, Holton JM, Steinbrenner AD, Alber T, Staskawicz BJ. Hyaloperonospora arabidopsidis ATR1 effector is a repeat protein with distributed recognition surfaces. Proceedings of the National Academy of Sciences,2011,108(32):13323-8.
Chuma I, Isobe C, Hotta Y, Ibaragi K, Futamata N, Kusaba M, Yoshida K, Terauchi R, Fujita Y, Nakayashiki H, Valent B, Tosa Y. Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species. PLOS Pathogens,2011,7(7):e1002147.
Coskun D, Britto DT, Jean YK, Kabir I, Tolay I, Torun AA, Kronzucker HJ. K(+) Efflux and Retention in Response to NaCl Stress Do Not Predict Salt Tolerance in Contrasting Genotypes of Rice (Oryza sativa L.). PLoS One,2013,8(2):e57767.
Craik DJ, Daly NL, Mulvenna J, Plan MR, Trabi M. Discovery, structure and biological activities of the cyclotides. Current Protein & Peptide Science,2004,5,297-315.
Dagdas YF, Yoshino K, Dagdas G, Ryder LS, Bielska E, Steinberg G, Talbot NJ. Septin-mediated plant cell invasion by the rice blast fungus, Magnaporthe oryzae. Science,2012,336(6088): 1590-5.
Dangl JL & Jones JDG. Plant pathogens and integrated defence responses to infection. Nature, 2001,411:826-833.
Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YH, Carbone I, Brown D, Oh YY, Donofrio N, Jeong JS, Soanes DM, Djonovic S, Kolomiets E, Rehmeyer C, Li W, Harding M, Kim S, Lebrun MH, Bohner H, Coughlan S, Butler J, Calvo S, Ma LJ, Nicol R, Purcell S, Nusbaum C, Galagan JE, Birren BW. The genome sequence of the rice blast fungus Magnaporthe grisea. Nature,2005,434(7036): 980-986.
DeYoung BJ, Innes RW. Plant NBS-LRR proteins in pathogen sensing and host defense. Nature Immunology,2006,7(12):1243-9.
Ding X, Richter T, Chen M, Fujii H, Seo YS, Xie M, Zheng X, Kanrar S, Stevenson RA, Dardick C, Li Y, Jiang H, Zhang Y, Yu F, Bartley LE, Chern M, Bart R, Chen X, Zhu L, Farmerie WG, Gribskov M, Zhu JK, Fromm ME, Ronald PC, Song WY. A rice kinase-protein interaction map. Plant Physiology,2009,149:1478-1492.
Doehlemann G, Wahl R, Horst RJ, Voll LM, Usadel B, Poree F, Stitt M, Pons-Kihnemann J, Sonnewald U, Kahmann R, Kamper J. Reprogramming a maize plant:transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis. The Plant Journal,2008, 56(2):181-95.
Domsalla, A., and Melzig, M. F.2008. Occurrence and properties of proteases in plant lattices. Planta Medica,2008,74:699-711.
Dong J, Xiao F, Fan F, Gu L, Cang H, Martin GB, Chai J. Crystal structure of the complex between Pseudomonas effector AvrPtoB and the tomato Pto kinase reveals both a shared and a unique interface compared with AvrPto-Pto. The Plant Cell,2009,21(6):1846-59.
Du H, Feng BR, Yang SS, Huang YB, Tang YX. The R2R3-MYB transcription factor gene family in maize. PLoS One,2012,7(6):e37463.
Duan Y, Guo J, Shi X, Guan X, Liu F, Bai P, Huang L, Kang Z. Wheat hypersensitive-induced reaction genes TaHIR1 and TaHIR3 are involved in response to stripe rust fungus infection and abiotic stresses. Plant Cell Reports,2013,32(2):273-83.
Figueroa M, Alderman S, Garvin DF, Pfender WF. Infection of Brachypodium distachyon by formae speciales of Puccinia graminis:early infection events and host-pathogen incompatibility. PLoS One,2013,8(2):e56857.
Fu RT, Ding L, Zhu J, Li P, Zheng AP. Morphological structure of propagules and electrophoretic karyotype analysis of false smut Villosiclava virens in rice. Journal of Microgiology,2012,50: 263-269.
Fodor SPA. Massively parallel genomics. Science,1997,277:393-395.
Gassmann W, Hinsch ME & Staskawicz BJ. The Arabidopsis RPS4 bacterial-resistance gene is a member of the TIR-NBS-LRR family of disease-resistance gene. The Plant Journal,1999,20: 265-277.
Glazebrook J. Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens. Annual Review of Phytopathology,2005,43:205-27.
Gohre V, Jones AM, Sklenar J, Robatzek S, Weber AP. Molecular crosstalk between PAMP-triggered immunity and photosynthesis. Molecular Plant-Microbe Interactions,2012, 25(8):1083-92.
Guo XY, Li Y, Fan J, Li L, Huang F, Wang WM. Progress in the study of false smut disease in rice. Journal of Agricultural Science and Technology,2012, A2:1211-1217.
Guryev V, Saar K, Adamovic T, Verheul M, van Heesch SA, Cook S, Pravenec M, Aitman T, Jacob H, Shull JD, Hubner N, Cuppen E. Distribution and functional impact of DNA copy number variation in the rat. Nature Genetics,2008,40:538-545.
Halterman D, Zhou F, Wei F, Wise RP, Schulze-Lefert P. The MLA6 coiled-coil, NBS-LRR protein confers AvrMla6-dependent resistance specificity to Blumeria graminis f. sp hordei in barley and wheat. The Plant Journal,2001,25:335-348.
Hammond-Kosack KE, Jones JDG. Response to plant pathogens. American Society of Plant Biologists,2000,1102-1156.
Hammond-Kosack KE, Parker JE. Deciphering plant-pathogen communication:fresh perspectives for molecular resistance breeding. Current Opinion in Biotechnology,2003,14(2):177-93.
Hedrich R. Ion channels in plants. Physiological Reviews,2012,92(4):1777-811.
Huda KM, Banu MS, Pathi KM, Tuteja N. Reproductive Organ and Vascular Specific Promoter of the Rice Plasma Membrane Ca(2+)ATPase Mediates Environmental Stress Responses in Plants. PLoS One,2013,8(3):e57803.
Hwang SG, Lin NC, Hsiao YY, Kuo CH, Chang PF, Deng WL, Chiang MH, Shen HL, Chen CY, Cheng WH. The Arabidopsis short-chain dehydrogenase/reductase 3, an abscisic acid deficient 2 homolog, is involved in plant defense responses but not in ABA biosynthesis. Plant Physiology and Biochemistry,2012,51:63-73.
Jiang CJ, Shimono M, Sugano S, Kojima M, Yazawa K, Yoshida R, Inoue H, Hayashi N, Sakakibara H, Takatsuji H. Abscisic acid interacts antagonistically with salicylic acid signaling pathway in rice-Magnaporthe grisea interaction. Molecular Plant-Microbe Interactions,2010, 23:791-798.
Johnson DS, Mortazavi A, Myers RM, Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science,2007,316(5830):1497-1502.
Guo J, Xu N, Li Z, Zhang S, Wu J, Kim DH, Sano Marma M, Meng Q, Cao H, Li X, Shi S, Yu L, Kalachikov S, Russo JJ, Turro NJ, Ju J. Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators. Proceedings of the National Academy of Sciences,2006,103(52):19635-19640.
Jung KY, Kyung CE, In LS, Lim CO, Ju CY. Differential expression of rice calmodulin promoters in response to stimuli and developmental tissue in transgenic tobacco plants. Biochemistry and Molecular Biology Reports,2010,43(1):9-16.
Kachroo A, Fu DQ, Havens W, Navarre D, Kachroo P, Ghabrial SA. An oleic acid-mediated pathway induces constitutive defense signaling and enhanced resistance to multiple pathogens in soybean. Molecular Plant-Microbe Interactions,2008,21(5):564-75.
Kachroo A, Kachroo P. Fatty Acid-derived signals in plant defense. Annual Review of Phytopathology,2009,47:153-76.
Kachroo A, Venugopal SC, Lapchyk L, Falcone D, Hildebrand D, Kachroo P. Oleic acid levels regulated by glycerolipid metabolism modulate defense gene expression in Arabidopsis. Proceedings of the National Academy of Sciences,2004,101(14):5152-7.
Katiyar A, Smita S, Lenka SK, Rajwanshi R, Chinnusamy V, Bansal KC. Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis. BMC Genomics,2012,13:544.
Kawahara Y, Oono Y, Kanamori H, Matsumoto T, Itoh T, Minami E. Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction. PLoS One,2012,7(11): e49423.
Khush GS. What it will take to feed 5.0 billion rice consumers in 2030? Plant Molecular Biology, 2005,59:1-6.
Khrunyk Y, Munch K, Schipper K, Lupas AN, Kahmann R. The use of FLP-mediated recombination for the functional analysis of an effector gene family in the biotrophic smut fungus Ustilago maydis. New Phytologist,2010,187(4):957-68.
Kim HS, Desveaux D, Singer AU, Patel P, Sondek J, Dangl JL. The Pseudomonas syringae effector AvrRpt2 cleaves its C-terminally acylated target, RIN4, from Arabidopsis membranes to block RPM1 activation. Proceedings of the National Academy of Sciences,2005,102(18): 6496-501.
Kim ST, Kang YH, Wang Y, Wu J, Park ZY, Rakwal R, Agrawal GK, Lee SY, Kang KY. Secretome analysis of differentially induced proteins in rice suspension-cultured cells triggered by rice blast fungus and elicitor. Proteomics,2009,9(5):1302-13.
Klingler J, Creasy R, Gao L, Nair RM, Calix AS, Jacob HS, Edwards OR, Singh KB. Aphid resistance in Medicago truncatula involves antixenosis and phloem-specific, inducible antibiosis, and maps to a single locus flanked by NBS-LRR resistance gene analogs. Plant Physiology,2005,137:1445-1455.
Knoth C, Ringler J, Dangl JL, Eulgem T. Arabidopsis WRKY70 is required for full RPP4-mediated disease resistance and basal defense against Hyaloperonospora parasitica. Molecular Plant-Microbe Interactions,2007,20(2):120-8.
Koh DM, Cook GJ, Husband JE. New horizons in oncologic imaging. The New England Journal of Medicine,2003,348:2487-2488
Kohorn BD, Kohorn SL, Todorova T, Baptiste G, Stansky K, McCullough M. A dominant allele of Arabidopsis pectin-binding wall-associated kinase induces a stress response suppressed by MPK6 but not MPK3 mutations. Molecular Plant,2012,5(4):841-51.
Kokkelink L, Minz A, Al-Masri M, Giesbert S, Barakat R, Sharon A, Tudzynski P. The small GTPase BcCdc42 affects nuclear division, germination and virulence of the gray mold fungus Botrytis cinerea. Fungal Genetics and Biology,2011,48(11):1012-9.
Krasileva KV, Dahlbeck D, Staskawicz BJ. Activation of an Arabidopsis resistance protein is specified by the in planta association of its leucine-rich repeat domain with the cognate oomycete effector. The Plant Cell,2010,22(7):2444-58.
Krusze wslca Joama S. Heterologous expression of genes in filamentous fungi. Acta Biochimica Polonica,1999,46(1):181-195.
Lausted C, Dahl T, Warren C, King K, Smith K, Johnson M, Saleem R, Aitchison J, Hood L, Lasky SR. POSaM:afast, flexible, open-source, inkjet oligonucleotide synthesizer and miroarrayer. Genome Biology,2004,5:R58.
Leterrier M, Corpas FJ, Barroso JB, Sandalio LM, del Rio LA. Peroxisomal Monodehydroascorbate Reductase. Genomic Clone Characterization and Functional Analysis under Environmental Stress Conditions. Plant Physiology,2005,138(4):2111-2123.
Li G, Meng X, Wang R, Mao G, Han L, Liu Y, Zhang S. Dual-level regulation of ACC synthase activity by MPK3/MPK6 cascade and its downstream WRKY transcription factor during ethylene induction in Arabidopsis. PLOS Genetics,2012,8(6):e1002767.
Li H, Zhou SY, Zhao WS, Su SC, Peng YL. A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance. Plant Molecular Biology, 2009,69:337-346.
Li S, Yu J, Zhu M, Zhao F, Luan S. Cadmium impairs ion homeostasis by altering K+and Ca2+ channel activities in rice root hair cells. Plant, Cell & Environment.2012,35(11):1998-2013.
Li W, Wu J, Weng S, Zhang D, Zhang Y, Shi C. Characterization and fine mapping of the glabrous leaf and hull mutants (gl1) in rice (Oryza sativa L.). Plant Cell Reports,2010,29(6):617-27.
Li Y, Koiso Y, Kobayashi H, Hashimoto Y, Iwasaki S. Ustiloxins, new antimitotic cyclic peptides: interaction with porcine brain tubulin. Biochemical Pharmacology,1995,49(10):1367-1372.
Li YS, Huang SD, Yang J, Wang CL. Analysis of quantitative trait loci for resistance to rice false smut. Acta Agronomica Sinica,2011,37:778-783.
Lijavetzky D, Carbonero P, Vicente-Carbajosa J. Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families. BMC Evolutionary Biology,2003,3:17.
Lin B, Wang J, Cheng Y. Recent patents and advances in the next-generation sequencing technologies. Recent Patents on Biomedical Engineering,2008,1:60-67.
Liu C, Li C, Liang D, Wei Z, Zhou S, Wang R, Ma F. Differential expression of ion transporters and aquaporins in leaves may contribute to different salt tolerance in Malus species. Plant Physiology and Biochemistry,2012,58:159-65.
Liu G, Tian H, Huang YQ, Hu J, Ji YX, Li SQ, Feng YQ, Guo L, Zhu YG. Alterations of mitochondrial protein assembly and jasmonic acid biosynthesis pathway in Honglian (HL)-type cytoplasmic male sterility rice. The Journal of Biological Chemistry,2012,287(47):40051-60.
Liu L, Botos I, Wang Y, Leonard JN, Shiloach J, Segal DM, Davies DR. Structural basis of Toll-like receptor 3 signaling with double-stranded RNA. Science,2008,320:379-81
Ling Z Z, Mew T V, Wang J L, Lei C L, Huang N. Development of Chinese near-isogenic lines of rice and their differentiating ability of pathogenic races of blast fungus. Chinese Agricultural Sciences,2001,50-56.
Madureira HC, Pereira TN, Da Cunha M, Klein DE. Histological analysis of pollen-pistil interactions in sour passion fruit plants (Passiflora edulis Sims). Biocell,2012,36(2):83-90.
Mao C, Wang S, Jia Q, Wu P. OsEILl, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component. Plant Molecular Biology,2006,61:141-52.
Mao G, Meng X, Liu Y, Zheng Z, Chen Z, Zhang S. Phosphorylation of a WRKY transcription factor by two pathogen-responsive MAPKs drives phytoalexin biosynthesis in Arabidopsis. The Plant Cell,2011,23:1639-1653.
Marcel JADG, Bundock P, Hooykass PJJ. Agrobacterium tumefaciens-mediated transformation of filamentous fungi. Nature Biotechnolgy,1998,16:839-842.
Marcel S, Sawers R, Oakeley E, Angliker H, Paszkowski U. Tissue-adapted invasion strategies of the rice blast fungus Magnaporthe oryzae. The Plant Cell,2010,22(9):3177-87.
Mardis ER. The impact of next-generation sequencing technology on genetics. Trends in Genetics, 2008,24(3):133-141.
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, et al. Genome sequencing in microfabricated high-density picolitre reaetors. Narure,2005,437:376-380
Mase K, Mizuno T, Ishihama N, Fujii T, Mori H, Kodama M, Yoshioka H. Ethylene signaling pathway and MAPK cascades are required for AAL toxin-induced programmed cell death. Molecular Plant-Microbe Interactions,2012,25(8):1015-25.
Meier S, Ruzvidzo O, Morse M, Donaldson L, Kwezi L, Gehring C. The Arabidopsis wall associated kinase-like 10 gene encodes a functional guanylyl cyclase and is co-expressed with pathogen defense related genes. PLoS One,2010,5(1):e8904.
Minoche A E, Dohm J C, Himmelbauer H. Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems. Genome Biology,2011, 12(11):R112.
Mishra N C.Characterization of the new osmotic mutant which originated during genetic transformation in Neurospora crassa. Genetics Research,1977,29:9-19.
Mitra R D, Church G M. In situ localized amplification and contact replication of many individual DNA molecules. Nucleic Acids Research,1999,27:e34.
Mondragon-Palomino M, Meyers BC, Michelmore RW, Gaut BS. Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Research,2002,12: 1305-1315.
Mosolov W, Grigor'eva LI, Valueva TA. Involvement of proteolytic enzymes and their inhibitors in plant protection. Applied Biochemistry and Microbiology,2001,37:115-123.
Mueller AN, Ziemann S, Treitschke S, Aβmann D, Doehlemann G. Compatibility in the Ustilago maydis-Maize Interaction Requires Inhibition of Host Cysteine Proteases by the Fungal Effector Pit2. PLOS Pathogens,2013,9(2):e1003177.
Mullins ED, Chen X, Romaine P, Raina R, Geiser DM, Kang S. Agrobacterium mediated transformation of Fusarium oxysporum:an efficient tool for insertional mutagenesis and gene transfer. Phytopathology,2001,91:173-180.
Miintz K. Protein dynamics and proteolysis in plant vacuoles. Journal of Experimental Botany, 2007,58(10):2391-407.
Munoz-Bertomeu J, Bermudez MA, Segura J, Ros R. Arabidopsis plants deficient in plastidial glyceraldehyde-3-phosphate dehydrogenase show alterations in abscisic acid (ABA) signal transduction:interaction between ABA and primary metabolism. Journal of Experimental Botany,2011,62(3):1229-39.
Nakao M, Nakamura R, Kita K, Inukai R, Ishikawa A. Non-host resistance to penetration and hyphal growth of Magnaporthe oryzae in Arabidopsis. Surface Science Reports,2011,1:171.
Narsai R, Castleden I, Whelan J. Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana. BMC Plant Biology,10,2010,262.
Nowrousian M. Next-generation sequencing techniques for eukaryotic microorganisms: sequencing-based solutions to biological problems. Eukaryot Cell,2010,9(9):1300-1310.
Okamoto S, Yu F, Harada H, Okajima T, Hattan J, Misawa N, Utsumi R. A short-chain dehydrogenase involved in terpene metabolism from Zingiber zerumbet. FEBS Journal,2011, 278(16):2892-900.
Oono Y, Kawahara Y, Kanamori H, Mizuno H, Yamagata H, Yamamoto M, Hosokawa S, Ikawa H, Akahane I, Zhu Z. mRNA-Seq reveals a comprehensive transcriptome profile of rice under phosphate stress. Rice,2011,4:50-65.
Padmanabhan MS, Ma S, Burch-Smith TM, Czymmek K, Huijser P, Dinesh-Kumar SP. Novel Positive Regulatory Role for the SPL6 Transcription Factor in the N TIR-NB-LRR Receptor-Mediated Plant Innate Immunity. PLOS Pathogens.2013,9(3):e1003235.
Pageau K, Reisdorf-Cren M, Morot-Gaudry JF, Masclaux-Daubresse C.2006. The two senescence-related markers, GS1 (cytosolic glutamine synthetase) and GDH (glutamate dehydrogenase), involved in nitrogen mobilization, are differentially regulated during pathogen attack and by stress hormones and reactive oxygen species in Nicotiana tabacum L. leaves. Journal of Experimental Botany,57,547-557.
Pankaj, Shakil NA, Kumar J, Singh MK, Singh K. Bioefficacy evaluation of controlled release formulations based on amphiphilic nano-polymer of carbofuran against Meloidogyne incognita infecting tomato. Journal of Environmental Science and Health, Part B,2012,47(6):520-8.
Panstruga R, Parker JE, Schulze-Lefert P. SnapShot:Plant immune response pathways. Cell,2009, 136(5):978.e1-3.
Paquis S, Mazeyrat-Gourbeyre F, Fernandez O, Crouzet J, Clement C, Baillieul F, Dorey S. Characterization of a F-box gene up-regulated by phytohormones and upon biotic and abiotic stresses in grapevine. Molecular Biology Reports,2011,38(5):3327-37.
Patel KV, Vala D. Effect of nitrogen doses on incidence of false smut of rice. Indian Journal of mycology and plant pathology,1992,22(3):260-262.
Pliego C, Kanematsu S, Ruano-Rosa D, de Vicente A, Lopez-Herrera C, Cazorla FM, Ramos C. GFP sheds light on the infection process of avocado roots by Rosellinia necatrix. Fungal Genetics and Biology,2009,46(2):137-45.
Prasad BD, Creissen G, Lamb C, Chattoo BB. Overexpression of rice (Oryza sativa L.) OsCDRl leads to constitutive activation of defense responses in rice and Arabidopsis. Molecular Plant-Microbe Interactions,2009,22(12):1635-44.
Qi YH, Yamauchi Y, Ling JQ, Kawano N, Li DB, Tanaka K. Cloning of a putative monogalactosyldiacylglycerol synthase gene from rice(Oryza sativa L.) plants and its expression in response to submergence and other stresses. Planta,2004,219:450-458.
Qiu D, Xiao J, Xie W, Cheng H, Li X, Wang S. Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice. BMC Plant Biology,2009,9:74.
Ravensdale M, Nemri A, Thrall PH, Ellis JG, Dodds PN. Co-evolutionary interactions between host resistance and pathogen effector genes in flax rust disease. Molecular Plant Pathology. 2011,12(1):93-102.
Rea AC, Liu P, Nasrallah JB. A transgenic self-incompatible Arabidopsis thaliana model for evolutionary and mechanistic studies of crucifer self-incompatibility. Journal of Experimental Botany,2010,61(7):1897-906.
Rehmany AP, Gordon A, Rose LE, Allen RL, Armstrong MR, Whisson SC, Kamoun S, Tyler BM, Birch PR, Beynon JL. Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 resistance genes from two Arabidopsis lines. The Plant Cell,2005,17(6): 1839-50.
Rietz S, Bernsdorff FE, Cai D. Members of the germin-like protein family in Brassica napus are candidates for the initiation of an oxidative burst that impedes pathogenesis of Sclerotinia sclerotiorum. Journal of Experimental Botany,2012,63(15):5507-19.
Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, Euskirchen G, Bernier B, Varhol R, Delaney A, Thiessen N, Griffith OL, He A, Marra M, Snyder M, Jones S. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nature Methods,2007,4(8):651-657.
Rogers YH, Ping JB, Huang ZJ, Bogdanova V, Andersonb S, Boyce-Jacino MT. Immobilization of oligonucleotides onto a glass support via disulfide bond:a method for preparation of DNA microarrays. Analytical Biochemistry,1999,266:23-30.
Rush MC, Shahjahan AKM, Jones JP. Outbreak of false smut of rice in Louisiana, Plant Disease, 2000,84:100.
Sanger F, Nicklen S, Coulson A R, DNA sequencing with chain-terminating inhibitors.1977. Biotechnology,1992,24:104-8.
Sasaki R. Existence of strains in rice blast. Journal of Plant Protection,1922,9:633-644.
Savary S, Willocquet L, Elazegui FA, Castilla N, Teng PS. Rice pest constraints in tropical Asia: quantification of yield losses due to rice pests in a range of production situations. Plant Disease, 2000,84:357-369.
Scherbak N, Ala-Haivala A, Brosche M, Bower N, Strid H, Gittins JR, Grahn E, Eriksson LA, Strid A. The pea SAD short-chain dehydrogenase/reductase:quinone reduction, tissue distribution, and heterologous expression. Plant Physiology,2011,155(4):1839-50.
Schroud E, Tebeest DO. Germination and infection of rice roots by spores of Ustilaginoidea virens. Well Rice Research Studies,2005,540:143-151.
Sehneeberger K, Ossowski S, Lanz C, Juul T, Petersen AH, Nielsen KL, J(?)rgensen JE, Weigel D, Andersen SU. SHOREmaP:simultaneous mapping and mutation identification by deep sequencing. Nature Methods,2009,6:550-551.
Sehulze A, Downward J. Navigating gene expression using microarrays-a technology review. Nature Cell Biology,2001,3:190-195.
Shi B, Ni L, Zhang A, Cao J, Zhang H, Qin T, Tan M, Zhang J, Jiang M. OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice. Molecular Plant,2012,5(6):1359-74.
Simonsen SM, Sando L, Ireland DC, Colgrave ML, Bharathi R,Go "ransson U, Craik DJ. A continent of plant defence peptide diversity:cyclotides in Australian Hybanthus (Violaceae). The Plant Cell,2005,17:3176-3189.
Singh A, Pandey A, Baranwal V, Kapoor S, Pandey GK. Comprehensive expression analysis of rice phospholipase D gene family during abiotic stresses and development. Plant Signaling & Behavior,2012,7(7):847-55.
Skirycz A, Reichelt M, Burow M, Birkemeyer C, Rolcik J, Kopka J, Zanor MI, Gershenzon J, Strnad M, Szopa J, Mueller-Roeber B, Witt I. DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis. The Plant Journal, 2006,47:10-24.
Slabaugh E, Held M, Brandizzi F. ntrol of root hair development in Arabidopsis thaliana by an endoplasmic reticulum anchored member of the R2R3-MYB transcription factor family. The Plant Journal,2011,67(3):395-405.
Snedden W A, Fromm H. Calmpdulin as a versatile calcium signal transducer in plants. New Phytologist,2001,151:35-66.
Snijders AM, Nowak N, Segraves R, Blackwood S, Brown N, Conroy J, Hamilton G, Hindle AK, Huey B, Kimura K, et al. Assembly of microarrays for genome-wide measurement of DNA copy number. Nature Genetics,2001,29:263-264.
Soneson C, Delorenzi M. A comparison of methods for differential expression analysis of RNA-seq data. BMC Bioinformatics,2013,14:91.
Song WY, Wang GL, Chen LL, Kim HS, Pi LY, Holsten T, Gardner J, Wang B, Zhai WX, Zhu LH, Fauquet C, Ronald P. A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science,1995,270:1804-1806.
Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, Thorne N, Redon R, Bird CP, de Grassi A, Lee C, Tyler-Smith C, Carter N, Scherer SW, Tavare S, Deloukas P, Hurles ME, Dermitzakis ET. Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science,2007,315:848-853.
Strange R.N. and Scott P.R. Plant disease:a threat to global food security. Annual Review of Phytopathology,2005,43:83-116.
Sukno SA, Garcia VM, Shaw BD, Thon MR. Root infection and systemic colonization of maize by Colletotrichum graminicola. Applied and Environmental Microbiology,2008,74(3):823-32.
Sun X, Wang GL. Genome-Wide Identification, Characterization and Phylogenetic Analysis of the Rice LRR-Kinases. PLoS ONE,2011,6(3):e16079.
Sweetlove LJ, Fait A, Nunes-Nesi A, Williams T, Fernie AR. The mitochondrion:an integration point of cellular metabolism and signalling. Critical Reviews in Plant Sciences,2007,26: 17-43.
Tanaka E, Kumagawa T, Tanaka C, Koga H. Simple transformation of the rice false smut fungus Villosiclava virens by electroporation of intact conidia. Mycoscience, DOI 10.1007/s 10267-011-0115-6.
Tang X, De Rooij M, De Jong L. Volume change measurements of rice by environmental scanning electron microscopy and stereoscopy. Scanning,2007,29(5):197-205.
Tang YX, JingJ, Hu DW, Yong ML, Xu Y, He LP. Elucidation of the infection process of Ustilaginoidea virens (teleomorph:Villosiclava virens) in rice spikelets. Plant Pathology,2013, 62:1-8.
Tavernier V, Cadiou S, Pageau K, Lauge R, Reisdorf-Cren M, Langin T, Masclaux-Daubresse C. The plant nitrogen mobilization promoted by Colletotrichum lindemuthianum in Phaseolus leaves depends on fungus pathogenicity. Journal of Experimental Botany,2007,58:3351-3360.
Tombuloglu H, Kekec G, Sakcali MS, Unver T. Transcriptome-wide identification of R2R3-MYB transcription factors in barley with their boron responsive expression analysis. Molecular Genetics and Genomics,2013,29.
Turner JG, Ellis C, Devoto A. The jasmonate signal pathway. The Plant Cell,2002,14 Suppl:S153-64.
van Doom WG, Woltering EJ. Senescence and programmed cell death:substance or semantics? Journal of Experimental Botany,2004,55,2147-2154.
Wahl R, Wippel K, Goos S, Kamper J, Sauer N. A novel high-affinity sucrose transporter is required for virulence of the plant pathogen Ustilago maydis. PLOS Biology,2010, 8(2):e 1000303.
Wang N, Huang HJ, Ren ST, Li JJ, Sun Y, Sun DY, Zhang SQ. The rice wall-associated receptor-like kinase gene OsDEES1 plays a role in female gametophyte development. Plant Physiology,2012,160(2):696-707.
Wang S, Kurepa J, Hashimoto T, Smalle JA. Salt stress-induced disassembly of Arabidopsis cortical microtubule arrays involves 26S proteasome-dependent degradation of SPIRAL1. The Plant Cell,2011,3(9):3412-27.
Wang WS, Pan YJ, Zhao XQ, Dwivedi D, Zhu LH, Ali J, Fu BY, Li ZK. Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.). Journal of Experimental Botany,2011,62(6):1951-60.
Wang X, Wang X, Duan Y, Yin S, Zhang H, Huang L, Kang Z. TaAbc1, a Member of Abel-Like Family Involved in Hypersensitive Response against the Stripe Rust Fungal Pathogen in Wheat. PLoS One,2013,8(3):e58969.
Wang Z, Gerstein M, Snyder M. RNA-Seq:a revolutionary tool for transcriptomics. Nature Reviews Genetics,2009,10(1):57-63.
Wen Y, Wang W, Feng J, Luo MC, Tsuda K, Katagiri F, Bauchan G, Xiao S. Identification and utilization of a sow thistle powdery mildew as a poorly adapted pathogen to dissect post-invasion non-host resistance mechanisms in Arabidopsis. Journal of Experimental Botany, 2011,62(6):2117-29.
Wu J, Steinebrunner I, Sun Y, Butterfield T, Torres J, Arnold D, Gonzalez A, Jacob F, Reichler S, Roux SJ. Apyrases (nucleoside triphosphate-diphosphohydrolases) play a key role in growth control in Arabidopsis. Plant Physiology,2007,144(2):961-75.
Wu X, Knapp S, Stamp A, Stammers DK, Jornvall H, Dellaporta SL, Oppermann U. Biochemical characterization of TASSELSEED 2, an essential plant short-chain dehydrogenase/reductase with broad spectrum activities. FEBS Journal,2007,274(5):1172-82.
Yamada M, Kiyosawa S, Yamaguchi T, Hirano T, Kobayashi T, Kashibuchi K, Watanabe S. Proposal of a new method for differentiating races of Pyricularia oryzae Cavara in Japan. Annals of the Phytopathological Society of Japan,1976,42:216-219.
Yu J, Hu S, Wang J et al. A draft sequence of the rice genome(Oryza sativa L.ssp indica). Science, 2002,296:79-92.
Zaltsman A, Krichevsky A, Loyter A, Citovsky V. Agrobacterium induces expression of a host F-box protein required for tumorigenicity. Cell Host & Microbe,2010,7(3):197-209.
Zhang DB, Luo X, Zhu L. Cytological analysis and genetic control of rice anther development. Journal of Genetics and Genomics,2011,38:379-390.
Zhang H, Wang S. Rice versus Xanthomonas oryzae pv. oryzae:a unique pathosystem. Current Opinion in Plant Biology,2013,4:S1369-5266.
Zhang L, Gao M, Hu J, Zhang X, Wang K, Ashraf M. Modulation Role of Abscisic Acid (ABA) on Growth, Water Relations and Glycinebetaine Metabolism in Two Maize(Zea mays L.) Cultivars under Drought Stress. International Journal of Molecular Sciences,2012,13(3): 3189-202.
Zhang L, Xiao S, Li W, Feng W, Li J, Wu Z, Gao X, Liu F, Shao M. Overexpression of a Harpin-encoding gene hrfl in rice enhances drought tolerance. Journal of Experimental Botany, 2011,62(12):4229-38.
Zhang Q. Strategies for developing green super rice. Proceedings of the national Academy of Sciences,2007, (104):164-166.
Zhou YL, Pan YJ, Xie XW, Zhu LH, Xu JL, Wang S, Li ZK. Genetic diversity of rice false smut fungus, Ustilaginoidea virens, and its pronoemced differentiation of populations in north China. Journal of Phytopathology,2008,156:559-564.
Zhou YL, Izumitsu K, Sonoda R. PCR-based technique for specific detection of Ustilaginoidea virens and Ephelis japonica. Journal of Phytopathology,2003,151:513-518.
Zielinski RE. Calmodulin and calmodulin-binding proteins in plants. Annual Review of Plant Physiology and Plant Molecular Biology,1998,49:697-727.
Zou J, Liu C, Chen X. Proteomics of rice in response to heat stress and advances in genetic engineering for heat tolerance in rice. Plant Cell Reports,2011,30(12):2155-65.
Zurbriggen MD, Carrillo N, Tognetti VB, Melzer M, Peisker M, Hause B, Hajirezaei MR. Chloroplast-generated reactive oxygen species play a major role in localized cell death during the non-host interaction between tobacco and Xanthomonas campestris pv. vesicatoria. The Plant Journal,2009,60(6):962-73.
董海涛,钱钧,徐国军.稻曲病对粳稻产量损失的测定[J].浙江农业科学,2003,02：85-86.
樊荣辉,王永强,刘兵,张敬泽,王洪凯,胡东维.稻绿核菌无性孢子形成过程及厚垣孢子萌发率测定[J].菌物学报,2010,29(2)：188-192.
方先文,汤陵华,王艳平.水稻稻曲病抗性遗传机制[J].江苏农业学报,2008,24(6)：762-765.
高俊,奚本贵,吴永方,吴庭友,王德江,赵阳.稻曲病产量损失测定及经济阈值初探[J].江苏农业科学,2001,03：36-43.
黄峰.粳稻云引受稻瘟病菌诱导的基因表达谱分析[D].福州：福建师范大学硕士论文,2012：
胡玉兰,王乃奇,吴怀刚.凤阳县水稻稻曲病大发生的原因及防治对策[J].现代农业科技,2012,8：185.
韩永峰,杨倩,张胜伟,孙大业,孙颖.植物类受体激酶CrRLK1-L亚家族[J].生物化学与生物物理进展,2011,38(10)：891-899.
祭芳,曹欢,徐剑宏,殷宪超,史建荣.高效液相色谱-串联质谱法定量检测稻谷中的稻曲病菌毒素A和D[J].中国水稻科学,2012,26(2)：246-250.
姜志强,姜志超.稻曲病病粒数对水稻产量影响分析[J].北方水稻,2008,39(3)：53-54.
李小娟,刘二明,肖启明,刘年喜,王金辉,谭小平,郑和斌.水稻对稻曲病抗性的分级及相应级别的产量损失[J].湖南农业大学学报(自然科学版),2011,37(3)：275-279.
李静,代明武,赵红梅.施肥对稻曲病发生率的影响[J].新农业,2007,7：47.
李阳.稻曲病菌的生物学、侵染特性及遗传多样性研究[D].武汉：华中农业大学硕士论文,2007：
李卫平,王洪凯,林福呈.稻曲病菌厚垣孢子的萌发特性[J].浙江农业学报,2008,20(4)：278-281.
刘丙新.水稻白叶枯病菌胁迫下的全基因组表达谱分析及水稻恢复系的白叶枯病抗性改良[D].北京：中国农业科学院硕士论文,2010：
卢代华,毛建辉,王平,何忠全,陈放.籼型杂交水稻对稻曲病的田间抗性差异[J],2008,35(4)：289-294.
陆凡,陈志谊,陈毓苓,史阿宝,王法明,张宏图.稻曲病菌的生物学特性及其侵染循环中某些未确定要点的研究[J].江苏农业学报,1996,12(4)：35-40.
吕博,杨丹,贾切,罗汉钢,黄俊斌.基于PCR技术的稻曲病菌侵染特性研究[A].见：中国植物病理学会.2009年学术年会论文集[C].中国农业科学技术出版社.2009年：
缪巧明.稻曲病的侵染途径研究[J].云南农业大学学报,1992,19(1)：40-42.
潘勋,啜惠娥.稻曲病发生程度与气象因素的关系研究[J].河北农垦科技,1997,2：9-12.
潘晓光,段承俐,萧凤回.植物内流型钾离子通道的研究进展[J].云南农业大学学报,2008,23(2)：238-244.
秦玉金,刘学儒,杨进.扬州市近年稻曲病发生加重原因分析及防治对策[J].上海农业科技,2012,3：137-138.
孙梓健,韦静宜,王小住,宋明,汤青林,王志敏,任雪松.结球甘蓝花粉钙调素基因的克隆与表达分析[J].园艺学报,2012,39(4)：677-686.
谭小平,宋建伟,刘二明,刘年喜,王金辉,肖启明.湖南稻曲病菌群体遗传多样性分析[J].湖南农业大学学报(自然科学版),2008,34(6)：694-697.
王国良.稻曲病菌厚垣孢子侵染时期和侵染途径的研究[J].植物保护学报,1996,19(2)：97-100.
王金华,陈越华.湖南省2004年中、晚稻稻曲病流行情况调查[J].中国植保导刊,2005(8)：14-15.
王梅,周永力,赵震宇,郭庆元,谢学文.稻曲病发病程度与产量的相关性[J].新疆农业大学学报,2007,30(04)：76-79.
王疏,白元俊,刘晓舟.稻曲病接种菌源及接种方法的研究[J].辽宁农业科学,1996,(1)：33-35.
汪志伟,卢方林,王克贵.稻曲病的发生规律及综合防控技术[J].植物医生,2011,24(1)：6-7.
徐建龙,薛庆中,罗利军,黎志康.近等基因导入系定位水稻抗稻曲病数量性状位点的研究初报[J].浙江农业学报,2002,14(1)：14-19.
姚琳,叶慧丽,胡容平,吴江,卢代华,毛建辉,何忠全.稻曲病侵染机制的初步研究[J].西南农业学报,2012,25(04)：1273-1276.
杨秀娟,王舒婷,阮宏椿,石妞妞,甘林,陈福如.水稻稻曲病室内人工接种技术[J].植物保护学报,2011,38(5)：395-400.
余育超.成都：全球水稻微核心种质抗病基因同源序列多态性及与稻曲病抗性关联的分析[D].四川师范大学硕士学位论文,2012：
张舒,常向前,陈其志,吕亮,杨小林,喻大昭,黄俊斌,李阳,罗汉刚,张求东,王利兵,史艳云.湖北省稻曲病菌Usitilaginoidea vriens遗传多样性的初步分析[A].见：植物保护与现代农业-中国植物保护学会.2007年学术年会论文集[C].中国农业科学技术出版社,2007：
张舒,陈其志,吕亮.湖北省水稻部分主栽品种对稻曲病的抗性鉴定[J].安徽农学报,2006,12(5)：76-78.
张君成,张炳欣,陈志谊,刘永锋,陆凡.稻曲病菌分生孢子的生物学研究[J].植物病理学报,2003,33(1)：44-47.
张震,王教瑜,杜新法,柴荣耀,毛雪琴,邱海萍,孙国昌.稻曲病菌cDNA文库的构建[J].植物病理学报,2008,38(5)：462-467.
张震,杜新法,柴荣耀,毛雪琴,邱海萍,王艳丽,王教瑜,孙国昌.根癌农杆菌介导遗传转化稻曲病菌[J].中国水稻科学,2006,20(4)：440-442.
左广胜,冉西京,杜生茂.稻曲病菌初侵染源研究[J].中国农学通报,1996,2(5)：7-8.
Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. The Plant Cell,2003,15(1):63-78.
Allen AM, Thorogood CJ, Hegarty MJ, Lexer C, Hiscock SJ. Pollen-pistil interactions and self-incompatibility in the Asteraceae:new insights from studies of Senecio squalidus (Oxford ragwort). Annals of Botany,2011,108(4):687-98.
An C, Mou Z. The function of the Mediator complex in plant immunity. Plant Signaling & Behavior,2013,8(3):doi:pii:e23182.
Ashizawa T, Takahashi M, Arai M, Arie T. Rice false smut pathogen, Ustilaginoidea virens, invades through small gap at the apex of a rice spikelet before heading. Journal of General Plant Pathology,2012,78:255-259.
Atia MMM. Rice false smut (Ustilaginoidea virens) in Egypt. Journal of Plant Diseases and Protection,2004,111:71-82.
Atkins JG, Robert AL, Adair CR, Goto K, Kozaka T, Yanagida R, Yamada M, Matsumoto S. An international set of rice varieties for differentiating races of Piricularia oryzae. Phytopathology, 1967,57:297-301.
Badri DV, De-la-Pena C, Lei Z, Manter DK, Chaparro JM, Guimaraes RL, Sumner LW, Vivanco JM. Root secreted metabolites and proteins are involved in the early events of plant-plant recognition prior to competition. PLoS One,2012,7(10):e46640.
Baek KH, Choi D. Roles of plant proteases in pathogen defense. Plant Pathology Journal,2008,24: 367-374.
Bagnaresi P, Biselli C, Orru L, Urso S, Crispino L, Abbruscato P, Piffanelli P, Lupotto E, Cattivelli L, Vale G. Comparative transcriptome profiling of the early response to Magnaporthe oryzae in durable resistant vs susceptible rice (Oryza sativa L.) genotypes. PLoS One,2012,7(12): e51609.
Barone AD, Beecher JE, Bury P, Chen C, Doede T, Fidanza JA, McGall GH. Photolithographic synthesis of high-density oligonucleotide probe arrays. Nucleotides Nucleic Acids,2001,20: 525-531.
Bart PHJ, Thomma, Thorsten, Nurnberger, Matthieu HAJ. Joosten, Of PAMPs and Effectors:The Blurred PTI-ETI Dichotomy. The Plant Cell,2011,23(1):4-15.
Belkhadir Y, Nimchuk Z, Hubert DA, Mackey D, Dangl JL. Arabidopsis RIN4 negatively regulates disease resistance mediated by RPS2 and RPM1 downstream or independent of the NDR1 signal modulator and is not required for the virulence functions of bacterial type III effectors AvrRpt2 or AvrRpm1. The Plant Cell,2004,16(10):2822-35.
Bhagat AP, Prasda Y, Yaday BP. Effect of environment on flase smut infection rice. Journal of Applied Biology,1993,3(1-2):56-59.
Boller T, Felix G. A renaissance of elicitors:perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annual Review of Plant Biology,2009,60: 379-406.
Bordiec S, Paquis S, Lacroix H, Dhondt S, Ait Barka E, Kauffmann S, Jeandet P, Mazeyrat-Gourbeyre F, Clement C, Baillieul F, Dorey S. Comparative analysis of defence responses induced by the endophytic plant growth-promoting rhizobacterium Burkholderia phytofirmans strain PsJN and the non-host bacterium Pseudomonas syringae pv. pisi in grapevine cell suspensions. Journal of Experimental Botany,2011,62(2):595-603.
Bouche N, Fromm H. GABA in plants:just a metabolite? Trends in Plant Science,2004,9: 110-115.
Cai X, Zhang Y, Zhang C, Zhang T, Hu T, Ye J, Zhang J, Wang T, Li H, Ye Z. Genome-wide Analysis of Plant-specific Dof Transcription Factor Family in Tomato. Journal of Integrative Plant Biology,2013,5:doi:10.1111/jipb.12043.
Canonne J, Marino D, Jauneau A, Pouzet C, Briere C, Roby D, Rivas S. The Xanthomonas type III effector XopD targets the Arabidopsis transcription factor MYB30 to suppress plant defense. The Plant Cell,2011,23(9):3498-511.
Chagne D, Lin-Wang K, Espley RV, Volz RK, How NM, Rouse S, Brendolise C, Carlisle CM, Kumar S, De Silva N, Micheletti D, McGhie T, Crowhurst RN, Storey RD, Velasco R, Hellens RP, Gardiner SE, Allan AC. An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes. Plant Physiology,2013,161(1):225-39.
Chen LQ, Hou BH, Lalonde S, Takanaga H, Hartung ML, Qu XQ, Guo WJ, Kim JG, Underwood W, Chaudhuri B, Chermak D, Antony G, White FF, Somerville SC, Mudgett MB, Frommer WB. 2010. Sugar transporters for intercellular exchange and nutrition of pathogens. Nature,468, 527-532.
Chen X, Chern M, Canlas PE, Ruan D, Jiang C, Ronald PC. An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity. Proceedings of the National Academy of Sciences,2010,107(17):8029-34.
Cheng WH, Endo A, Zhou L, Penney J, Chen HC, Arroyo A, Leon P, Nambara E, Asami T, Seo M, Koshiba T, Sheen J. A unique short-chain dehydrogenase/reductase in Arabidopsis glucose signaling and abscisic acid biosynthesis and functions. The Plant Cell,2002,14(11):2723-43.
Chi Y, Yang Y, Zhou Y, Zhou J, Fan B, Yu JQ, Chen Z. Protein-Protein Interactions in the Regulation of WRKY Transcription Factors. Molecular Plant,2013,6(2):287-300.
Chou S, Krasileva KV, Holton JM, Steinbrenner AD, Alber T, Staskawicz BJ. Hyaloperonospora arabidopsidis ATR1 effector is a repeat protein with distributed recognition surfaces. Proceedings of the National Academy of Sciences,2011,108(32):13323-8.
Chuma I, Isobe C, Hotta Y, Ibaragi K, Futamata N, Kusaba M, Yoshida K, Terauchi R, Fujita Y, Nakayashiki H, Valent B, Tosa Y. Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species. PLOS Pathogens,2011,7(7):e1002147.
Coskun D, Britto DT, Jean YK, Kabir I, Tolay I, Torun AA, Kronzucker HJ. K(+) Efflux and Retention in Response to NaCl Stress Do Not Predict Salt Tolerance in Contrasting Genotypes of Rice (Oryza sativa L.). PLoS One,2013,8(2):e57767.
Craik DJ, Daly NL, Mulvenna J, Plan MR, Trabi M. Discovery, structure and biological activities of the cyclotides. Current Protein & Peptide Science,2004,5,297-315.
Dagdas YF, Yoshino K, Dagdas G, Ryder LS, Bielska E, Steinberg G, Talbot NJ. Septin-mediated plant cell invasion by the rice blast fungus, Magnaporthe oryzae. Science,2012,336(6088): 1590-5.
Dangl JL & Jones JDG. Plant pathogens and integrated defence responses to infection. Nature, 2001,411:826-833.
Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YH, Carbone I, Brown D, Oh YY, Donofrio N, Jeong JS, Soanes DM, Djonovic S, Kolomiets E, Rehmeyer C, Li W, Harding M, Kim S, Lebrun MH, Bohner H, Coughlan S, Butler J, Calvo S, Ma LJ, Nicol R, Purcell S, Nusbaum C, Galagan JE, Birren BW. The genome sequence of the rice blast fungus Magnaporthe grisea. Nature,2005,434(7036): 980-986.
DeYoung BJ, Innes RW. Plant NBS-LRR proteins in pathogen sensing and host defense. Nature Immunology,2006,7(12):1243-9.
Ding X, Richter T, Chen M, Fujii H, Seo YS, Xie M, Zheng X, Kanrar S, Stevenson RA, Dardick C, Li Y, Jiang H, Zhang Y, Yu F, Bartley LE, Chern M, Bart R, Chen X, Zhu L, Farmerie WG, Gribskov M, Zhu JK, Fromm ME, Ronald PC, Song WY. A rice kinase-protein interaction map. Plant Physiology,2009,149:1478-1492.
Doehlemann G, Wahl R, Horst RJ, Voll LM, Usadel B, Poree F, Stitt M, Pons-Kihnemann J, Sonnewald U, Kahmann R, Kamper J. Reprogramming a maize plant:transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis. The Plant Journal,2008, 56(2):181-95.
Domsalla, A., and Melzig, M. F.2008. Occurrence and properties of proteases in plant lattices. Planta Medica,2008,74:699-711.
Dong J, Xiao F, Fan F, Gu L, Cang H, Martin GB, Chai J. Crystal structure of the complex between Pseudomonas effector AvrPtoB and the tomato Pto kinase reveals both a shared and a unique interface compared with AvrPto-Pto. The Plant Cell,2009,21(6):1846-59.
Du H, Feng BR, Yang SS, Huang YB, Tang YX. The R2R3-MYB transcription factor gene family in maize. PLoS One,2012,7(6):e37463.
Duan Y, Guo J, Shi X, Guan X, Liu F, Bai P, Huang L, Kang Z. Wheat hypersensitive-induced reaction genes TaHIR1 and TaHIR3 are involved in response to stripe rust fungus infection and abiotic stresses. Plant Cell Reports,2013,32(2):273-83.
Figueroa M, Alderman S, Garvin DF, Pfender WF. Infection of Brachypodium distachyon by formae speciales of Puccinia graminis:early infection events and host-pathogen incompatibility. PLoS One,2013,8(2):e56857.
Fu RT, Ding L, Zhu J, Li P, Zheng AP. Morphological structure of propagules and electrophoretic karyotype analysis of false smut Villosiclava virens in rice. Journal of Microgiology,2012,50: 263-269.
Fodor SPA. Massively parallel genomics. Science,1997,277:393-395.
Gassmann W, Hinsch ME & Staskawicz BJ. The Arabidopsis RPS4 bacterial-resistance gene is a member of the TIR-NBS-LRR family of disease-resistance gene. The Plant Journal,1999,20: 265-277.
Glazebrook J. Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens. Annual Review of Phytopathology,2005,43:205-27.
Gohre V, Jones AM, Sklenar J, Robatzek S, Weber AP. Molecular crosstalk between PAMP-triggered immunity and photosynthesis. Molecular Plant-Microbe Interactions,2012, 25(8):1083-92.
Guo XY, Li Y, Fan J, Li L, Huang F, Wang WM. Progress in the study of false smut disease in rice. Journal of Agricultural Science and Technology,2012, A2:1211-1217.
Guryev V, Saar K, Adamovic T, Verheul M, van Heesch SA, Cook S, Pravenec M, Aitman T, Jacob H, Shull JD, Hubner N, Cuppen E. Distribution and functional impact of DNA copy number variation in the rat. Nature Genetics,2008,40:538-545.
Halterman D, Zhou F, Wei F, Wise RP, Schulze-Lefert P. The MLA6 coiled-coil, NBS-LRR protein confers AvrMla6-dependent resistance specificity to Blumeria graminis f. sp hordei in barley and wheat. The Plant Journal,2001,25:335-348.
Hammond-Kosack KE, Jones JDG. Response to plant pathogens. American Society of Plant Biologists,2000,1102-1156.
Hammond-Kosack KE, Parker JE. Deciphering plant-pathogen communication:fresh perspectives for molecular resistance breeding. Current Opinion in Biotechnology,2003,14(2):177-93.
Hedrich R. Ion channels in plants. Physiological Reviews,2012,92(4):1777-811.
Huda KM, Banu MS, Pathi KM, Tuteja N. Reproductive Organ and Vascular Specific Promoter of the Rice Plasma Membrane Ca(2+)ATPase Mediates Environmental Stress Responses in Plants. PLoS One,2013,8(3):e57803.
Hwang SG, Lin NC, Hsiao YY, Kuo CH, Chang PF, Deng WL, Chiang MH, Shen HL, Chen CY, Cheng WH. The Arabidopsis short-chain dehydrogenase/reductase 3, an abscisic acid deficient 2 homolog, is involved in plant defense responses but not in ABA biosynthesis. Plant Physiology and Biochemistry,2012,51:63-73.
Jiang CJ, Shimono M, Sugano S, Kojima M, Yazawa K, Yoshida R, Inoue H, Hayashi N, Sakakibara H, Takatsuji H. Abscisic acid interacts antagonistically with salicylic acid signaling pathway in rice-Magnaporthe grisea interaction. Molecular Plant-Microbe Interactions,2010, 23:791-798.
Johnson DS, Mortazavi A, Myers RM, Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science,2007,316(5830):1497-1502.
Guo J, Xu N, Li Z, Zhang S, Wu J, Kim DH, Sano Marma M, Meng Q, Cao H, Li X, Shi S, Yu L, Kalachikov S, Russo JJ, Turro NJ, Ju J. Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators. Proceedings of the National Academy of Sciences,2006,103(52):19635-19640.
Jung KY, Kyung CE, In LS, Lim CO, Ju CY. Differential expression of rice calmodulin promoters in response to stimuli and developmental tissue in transgenic tobacco plants. Biochemistry and Molecular Biology Reports,2010,43(1):9-16.
Kachroo A, Fu DQ, Havens W, Navarre D, Kachroo P, Ghabrial SA. An oleic acid-mediated pathway induces constitutive defense signaling and enhanced resistance to multiple pathogens in soybean. Molecular Plant-Microbe Interactions,2008,21(5):564-75.
Kachroo A, Kachroo P. Fatty Acid-derived signals in plant defense. Annual Review of Phytopathology,2009,47:153-76.
Kachroo A, Venugopal SC, Lapchyk L, Falcone D, Hildebrand D, Kachroo P. Oleic acid levels regulated by glycerolipid metabolism modulate defense gene expression in Arabidopsis. Proceedings of the National Academy of Sciences,2004,101(14):5152-7.
Katiyar A, Smita S, Lenka SK, Rajwanshi R, Chinnusamy V, Bansal KC. Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis. BMC Genomics,2012,13:544.
Kawahara Y, Oono Y, Kanamori H, Matsumoto T, Itoh T, Minami E. Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction. PLoS One,2012,7(11): e49423.
Khush GS. What it will take to feed 5.0 billion rice consumers in 2030? Plant Molecular Biology, 2005,59:1-6.
Khrunyk Y, Munch K, Schipper K, Lupas AN, Kahmann R. The use of FLP-mediated recombination for the functional analysis of an effector gene family in the biotrophic smut fungus Ustilago maydis. New Phytologist,2010,187(4):957-68.
Kim HS, Desveaux D, Singer AU, Patel P, Sondek J, Dangl JL. The Pseudomonas syringae effector AvrRpt2 cleaves its C-terminally acylated target, RIN4, from Arabidopsis membranes to block RPM1 activation. Proceedings of the National Academy of Sciences,2005,102(18): 6496-501.
Kim ST, Kang YH, Wang Y, Wu J, Park ZY, Rakwal R, Agrawal GK, Lee SY, Kang KY. Secretome analysis of differentially induced proteins in rice suspension-cultured cells triggered by rice blast fungus and elicitor. Proteomics,2009,9(5):1302-13.
Klingler J, Creasy R, Gao L, Nair RM, Calix AS, Jacob HS, Edwards OR, Singh KB. Aphid resistance in Medicago truncatula involves antixenosis and phloem-specific, inducible antibiosis, and maps to a single locus flanked by NBS-LRR resistance gene analogs. Plant Physiology,2005,137:1445-1455.
Knoth C, Ringler J, Dangl JL, Eulgem T. Arabidopsis WRKY70 is required for full RPP4-mediated disease resistance and basal defense against Hyaloperonospora parasitica. Molecular Plant-Microbe Interactions,2007,20(2):120-8.
Koh DM, Cook GJ, Husband JE. New horizons in oncologic imaging. The New England Journal of Medicine,2003,348:2487-2488
Kohorn BD, Kohorn SL, Todorova T, Baptiste G, Stansky K, McCullough M. A dominant allele of Arabidopsis pectin-binding wall-associated kinase induces a stress response suppressed by MPK6 but not MPK3 mutations. Molecular Plant,2012,5(4):841-51.
Kokkelink L, Minz A, Al-Masri M, Giesbert S, Barakat R, Sharon A, Tudzynski P. The small GTPase BcCdc42 affects nuclear division, germination and virulence of the gray mold fungus Botrytis cinerea. Fungal Genetics and Biology,2011,48(11):1012-9.
Krasileva KV, Dahlbeck D, Staskawicz BJ. Activation of an Arabidopsis resistance protein is specified by the in planta association of its leucine-rich repeat domain with the cognate oomycete effector. The Plant Cell,2010,22(7):2444-58.
Krusze wslca Joama S. Heterologous expression of genes in filamentous fungi. Acta Biochimica Polonica,1999,46(1):181-195.
Lausted C, Dahl T, Warren C, King K, Smith K, Johnson M, Saleem R, Aitchison J, Hood L, Lasky SR. POSaM:afast, flexible, open-source, inkjet oligonucleotide synthesizer and miroarrayer. Genome Biology,2004,5:R58.
Leterrier M, Corpas FJ, Barroso JB, Sandalio LM, del Rio LA. Peroxisomal Monodehydroascorbate Reductase. Genomic Clone Characterization and Functional Analysis under Environmental Stress Conditions. Plant Physiology,2005,138(4):2111-2123.
Li G, Meng X, Wang R, Mao G, Han L, Liu Y, Zhang S. Dual-level regulation of ACC synthase activity by MPK3/MPK6 cascade and its downstream WRKY transcription factor during ethylene induction in Arabidopsis. PLOS Genetics,2012,8(6):e1002767.
Li H, Zhou SY, Zhao WS, Su SC, Peng YL. A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance. Plant Molecular Biology, 2009,69:337-346.
Li S, Yu J, Zhu M, Zhao F, Luan S. Cadmium impairs ion homeostasis by altering K+and Ca2+ channel activities in rice root hair cells. Plant, Cell & Environment.2012,35(11):1998-2013.
Li W, Wu J, Weng S, Zhang D, Zhang Y, Shi C. Characterization and fine mapping of the glabrous leaf and hull mutants (gl1) in rice (Oryza sativa L.). Plant Cell Reports,2010,29(6):617-27.
Li Y, Koiso Y, Kobayashi H, Hashimoto Y, Iwasaki S. Ustiloxins, new antimitotic cyclic peptides: interaction with porcine brain tubulin. Biochemical Pharmacology,1995,49(10):1367-1372.
Li YS, Huang SD, Yang J, Wang CL. Analysis of quantitative trait loci for resistance to rice false smut. Acta Agronomica Sinica,2011,37:778-783.
Lijavetzky D, Carbonero P, Vicente-Carbajosa J. Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families. BMC Evolutionary Biology,2003,3:17.
Lin B, Wang J, Cheng Y. Recent patents and advances in the next-generation sequencing technologies. Recent Patents on Biomedical Engineering,2008,1:60-67.
Liu C, Li C, Liang D, Wei Z, Zhou S, Wang R, Ma F. Differential expression of ion transporters and aquaporins in leaves may contribute to different salt tolerance in Malus species. Plant Physiology and Biochemistry,2012,58:159-65.
Liu G, Tian H, Huang YQ, Hu J, Ji YX, Li SQ, Feng YQ, Guo L, Zhu YG. Alterations of mitochondrial protein assembly and jasmonic acid biosynthesis pathway in Honglian (HL)-type cytoplasmic male sterility rice. The Journal of Biological Chemistry,2012,287(47):40051-60.
Liu L, Botos I, Wang Y, Leonard JN, Shiloach J, Segal DM, Davies DR. Structural basis of Toll-like receptor 3 signaling with double-stranded RNA. Science,2008,320:379-81
Ling Z Z, Mew T V, Wang J L, Lei C L, Huang N. Development of Chinese near-isogenic lines of rice and their differentiating ability of pathogenic races of blast fungus. Chinese Agricultural Sciences,2001,50-56.
Madureira HC, Pereira TN, Da Cunha M, Klein DE. Histological analysis of pollen-pistil interactions in sour passion fruit plants (Passiflora edulis Sims). Biocell,2012,36(2):83-90.
Mao C, Wang S, Jia Q, Wu P. OsEILl, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component. Plant Molecular Biology,2006,61:141-52.
Mao G, Meng X, Liu Y, Zheng Z, Chen Z, Zhang S. Phosphorylation of a WRKY transcription factor by two pathogen-responsive MAPKs drives phytoalexin biosynthesis in Arabidopsis. The Plant Cell,2011,23:1639-1653.
Marcel JADG, Bundock P, Hooykass PJJ. Agrobacterium tumefaciens-mediated transformation of filamentous fungi. Nature Biotechnolgy,1998,16:839-842.
Marcel S, Sawers R, Oakeley E, Angliker H, Paszkowski U. Tissue-adapted invasion strategies of the rice blast fungus Magnaporthe oryzae. The Plant Cell,2010,22(9):3177-87.
Mardis ER. The impact of next-generation sequencing technology on genetics. Trends in Genetics, 2008,24(3):133-141.
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, et al. Genome sequencing in microfabricated high-density picolitre reaetors. Narure,2005,437:376-380
Mase K, Mizuno T, Ishihama N, Fujii T, Mori H, Kodama M, Yoshioka H. Ethylene signaling pathway and MAPK cascades are required for AAL toxin-induced programmed cell death. Molecular Plant-Microbe Interactions,2012,25(8):1015-25.
Meier S, Ruzvidzo O, Morse M, Donaldson L, Kwezi L, Gehring C. The Arabidopsis wall associated kinase-like 10 gene encodes a functional guanylyl cyclase and is co-expressed with pathogen defense related genes. PLoS One,2010,5(1):e8904.
Minoche A E, Dohm J C, Himmelbauer H. Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems. Genome Biology,2011, 12(11):R112.
Mishra N C.Characterization of the new osmotic mutant which originated during genetic transformation in Neurospora crassa. Genetics Research,1977,29:9-19.
Mitra R D, Church G M. In situ localized amplification and contact replication of many individual DNA molecules. Nucleic Acids Research,1999,27:e34.
Mondragon-Palomino M, Meyers BC, Michelmore RW, Gaut BS. Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Research,2002,12: 1305-1315.
Mosolov W, Grigor'eva LI, Valueva TA. Involvement of proteolytic enzymes and their inhibitors in plant protection. Applied Biochemistry and Microbiology,2001,37:115-123.
Mueller AN, Ziemann S, Treitschke S, Aβmann D, Doehlemann G. Compatibility in the Ustilago maydis-Maize Interaction Requires Inhibition of Host Cysteine Proteases by the Fungal Effector Pit2. PLOS Pathogens,2013,9(2):e1003177.
Mullins ED, Chen X, Romaine P, Raina R, Geiser DM, Kang S. Agrobacterium mediated transformation of Fusarium oxysporum:an efficient tool for insertional mutagenesis and gene transfer. Phytopathology,2001,91:173-180.
Miintz K. Protein dynamics and proteolysis in plant vacuoles. Journal of Experimental Botany, 2007,58(10):2391-407.
Munoz-Bertomeu J, Bermudez MA, Segura J, Ros R. Arabidopsis plants deficient in plastidial glyceraldehyde-3-phosphate dehydrogenase show alterations in abscisic acid (ABA) signal transduction:interaction between ABA and primary metabolism. Journal of Experimental Botany,2011,62(3):1229-39.
Nakao M, Nakamura R, Kita K, Inukai R, Ishikawa A. Non-host resistance to penetration and hyphal growth of Magnaporthe oryzae in Arabidopsis. Surface Science Reports,2011,1:171.
Narsai R, Castleden I, Whelan J. Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana. BMC Plant Biology,10,2010,262.
Nowrousian M. Next-generation sequencing techniques for eukaryotic microorganisms: sequencing-based solutions to biological problems. Eukaryot Cell,2010,9(9):1300-1310.
Okamoto S, Yu F, Harada H, Okajima T, Hattan J, Misawa N, Utsumi R. A short-chain dehydrogenase involved in terpene metabolism from Zingiber zerumbet. FEBS Journal,2011, 278(16):2892-900.
Oono Y, Kawahara Y, Kanamori H, Mizuno H, Yamagata H, Yamamoto M, Hosokawa S, Ikawa H, Akahane I, Zhu Z. mRNA-Seq reveals a comprehensive transcriptome profile of rice under phosphate stress. Rice,2011,4:50-65.
Padmanabhan MS, Ma S, Burch-Smith TM, Czymmek K, Huijser P, Dinesh-Kumar SP. Novel Positive Regulatory Role for the SPL6 Transcription Factor in the N TIR-NB-LRR Receptor-Mediated Plant Innate Immunity. PLOS Pathogens.2013,9(3):e1003235.
Pageau K, Reisdorf-Cren M, Morot-Gaudry JF, Masclaux-Daubresse C.2006. The two senescence-related markers, GS1 (cytosolic glutamine synthetase) and GDH (glutamate dehydrogenase), involved in nitrogen mobilization, are differentially regulated during pathogen attack and by stress hormones and reactive oxygen species in Nicotiana tabacum L. leaves. Journal of Experimental Botany,57,547-557.
Pankaj, Shakil NA, Kumar J, Singh MK, Singh K. Bioefficacy evaluation of controlled release formulations based on amphiphilic nano-polymer of carbofuran against Meloidogyne incognita infecting tomato. Journal of Environmental Science and Health, Part B,2012,47(6):520-8.
Panstruga R, Parker JE, Schulze-Lefert P. SnapShot:Plant immune response pathways. Cell,2009, 136(5):978.e1-3.
Paquis S, Mazeyrat-Gourbeyre F, Fernandez O, Crouzet J, Clement C, Baillieul F, Dorey S. Characterization of a F-box gene up-regulated by phytohormones and upon biotic and abiotic stresses in grapevine. Molecular Biology Reports,2011,38(5):3327-37.
Patel KV, Vala D. Effect of nitrogen doses on incidence of false smut of rice. Indian Journal of mycology and plant pathology,1992,22(3):260-262.
Pliego C, Kanematsu S, Ruano-Rosa D, de Vicente A, Lopez-Herrera C, Cazorla FM, Ramos C. GFP sheds light on the infection process of avocado roots by Rosellinia necatrix. Fungal Genetics and Biology,2009,46(2):137-45.
Prasad BD, Creissen G, Lamb C, Chattoo BB. Overexpression of rice (Oryza sativa L.) OsCDRl leads to constitutive activation of defense responses in rice and Arabidopsis. Molecular Plant-Microbe Interactions,2009,22(12):1635-44.
Qi YH, Yamauchi Y, Ling JQ, Kawano N, Li DB, Tanaka K. Cloning of a putative monogalactosyldiacylglycerol synthase gene from rice(Oryza sativa L.) plants and its expression in response to submergence and other stresses. Planta,2004,219:450-458.
Qiu D, Xiao J, Xie W, Cheng H, Li X, Wang S. Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator of multiple physiological processes in rice. BMC Plant Biology,2009,9:74.
Ravensdale M, Nemri A, Thrall PH, Ellis JG, Dodds PN. Co-evolutionary interactions between host resistance and pathogen effector genes in flax rust disease. Molecular Plant Pathology. 2011,12(1):93-102.
Rea AC, Liu P, Nasrallah JB. A transgenic self-incompatible Arabidopsis thaliana model for evolutionary and mechanistic studies of crucifer self-incompatibility. Journal of Experimental Botany,2010,61(7):1897-906.
Rehmany AP, Gordon A, Rose LE, Allen RL, Armstrong MR, Whisson SC, Kamoun S, Tyler BM, Birch PR, Beynon JL. Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 resistance genes from two Arabidopsis lines. The Plant Cell,2005,17(6): 1839-50.
Rietz S, Bernsdorff FE, Cai D. Members of the germin-like protein family in Brassica napus are candidates for the initiation of an oxidative burst that impedes pathogenesis of Sclerotinia sclerotiorum. Journal of Experimental Botany,2012,63(15):5507-19.
Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, Euskirchen G, Bernier B, Varhol R, Delaney A, Thiessen N, Griffith OL, He A, Marra M, Snyder M, Jones S. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nature Methods,2007,4(8):651-657.
Rogers YH, Ping JB, Huang ZJ, Bogdanova V, Andersonb S, Boyce-Jacino MT. Immobilization of oligonucleotides onto a glass support via disulfide bond:a method for preparation of DNA microarrays. Analytical Biochemistry,1999,266:23-30.
Rush MC, Shahjahan AKM, Jones JP. Outbreak of false smut of rice in Louisiana, Plant Disease, 2000,84:100.
Sanger F, Nicklen S, Coulson A R, DNA sequencing with chain-terminating inhibitors.1977. Biotechnology,1992,24:104-8.
Sasaki R. Existence of strains in rice blast. Journal of Plant Protection,1922,9:633-644.
Savary S, Willocquet L, Elazegui FA, Castilla N, Teng PS. Rice pest constraints in tropical Asia: quantification of yield losses due to rice pests in a range of production situations. Plant Disease, 2000,84:357-369.
Scherbak N, Ala-Haivala A, Brosche M, Bower N, Strid H, Gittins JR, Grahn E, Eriksson LA, Strid A. The pea SAD short-chain dehydrogenase/reductase:quinone reduction, tissue distribution, and heterologous expression. Plant Physiology,2011,155(4):1839-50.
Schroud E, Tebeest DO. Germination and infection of rice roots by spores of Ustilaginoidea virens. Well Rice Research Studies,2005,540:143-151.
Sehneeberger K, Ossowski S, Lanz C, Juul T, Petersen AH, Nielsen KL, J(?)rgensen JE, Weigel D, Andersen SU. SHOREmaP:simultaneous mapping and mutation identification by deep sequencing. Nature Methods,2009,6:550-551.
Sehulze A, Downward J. Navigating gene expression using microarrays-a technology review. Nature Cell Biology,2001,3:190-195.
Shi B, Ni L, Zhang A, Cao J, Zhang H, Qin T, Tan M, Zhang J, Jiang M. OsDMI3 is a novel component of abscisic acid signaling in the induction of antioxidant defense in leaves of rice. Molecular Plant,2012,5(6):1359-74.
Simonsen SM, Sando L, Ireland DC, Colgrave ML, Bharathi R,Go "ransson U, Craik DJ. A continent of plant defence peptide diversity:cyclotides in Australian Hybanthus (Violaceae). The Plant Cell,2005,17:3176-3189.
Singh A, Pandey A, Baranwal V, Kapoor S, Pandey GK. Comprehensive expression analysis of rice phospholipase D gene family during abiotic stresses and development. Plant Signaling & Behavior,2012,7(7):847-55.
Skirycz A, Reichelt M, Burow M, Birkemeyer C, Rolcik J, Kopka J, Zanor MI, Gershenzon J, Strnad M, Szopa J, Mueller-Roeber B, Witt I. DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis. The Plant Journal, 2006,47:10-24.
Slabaugh E, Held M, Brandizzi F. ntrol of root hair development in Arabidopsis thaliana by an endoplasmic reticulum anchored member of the R2R3-MYB transcription factor family. The Plant Journal,2011,67(3):395-405.
Snedden W A, Fromm H. Calmpdulin as a versatile calcium signal transducer in plants. New Phytologist,2001,151:35-66.
Snijders AM, Nowak N, Segraves R, Blackwood S, Brown N, Conroy J, Hamilton G, Hindle AK, Huey B, Kimura K, et al. Assembly of microarrays for genome-wide measurement of DNA copy number. Nature Genetics,2001,29:263-264.
Soneson C, Delorenzi M. A comparison of methods for differential expression analysis of RNA-seq data. BMC Bioinformatics,2013,14:91.
Song WY, Wang GL, Chen LL, Kim HS, Pi LY, Holsten T, Gardner J, Wang B, Zhai WX, Zhu LH, Fauquet C, Ronald P. A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science,1995,270:1804-1806.
Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, Thorne N, Redon R, Bird CP, de Grassi A, Lee C, Tyler-Smith C, Carter N, Scherer SW, Tavare S, Deloukas P, Hurles ME, Dermitzakis ET. Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science,2007,315:848-853.
Strange R.N. and Scott P.R. Plant disease:a threat to global food security. Annual Review of Phytopathology,2005,43:83-116.
Sukno SA, Garcia VM, Shaw BD, Thon MR. Root infection and systemic colonization of maize by Colletotrichum graminicola. Applied and Environmental Microbiology,2008,74(3):823-32.
Sun X, Wang GL. Genome-Wide Identification, Characterization and Phylogenetic Analysis of the Rice LRR-Kinases. PLoS ONE,2011,6(3):e16079.
Sweetlove LJ, Fait A, Nunes-Nesi A, Williams T, Fernie AR. The mitochondrion:an integration point of cellular metabolism and signalling. Critical Reviews in Plant Sciences,2007,26: 17-43.
Tanaka E, Kumagawa T, Tanaka C, Koga H. Simple transformation of the rice false smut fungus Villosiclava virens by electroporation of intact conidia. Mycoscience, DOI 10.1007/s 10267-011-0115-6.
Tang X, De Rooij M, De Jong L. Volume change measurements of rice by environmental scanning electron microscopy and stereoscopy. Scanning,2007,29(5):197-205.
Tang YX, JingJ, Hu DW, Yong ML, Xu Y, He LP. Elucidation of the infection process of Ustilaginoidea virens (teleomorph:Villosiclava virens) in rice spikelets. Plant Pathology,2013, 62:1-8.
Tavernier V, Cadiou S, Pageau K, Lauge R, Reisdorf-Cren M, Langin T, Masclaux-Daubresse C. The plant nitrogen mobilization promoted by Colletotrichum lindemuthianum in Phaseolus leaves depends on fungus pathogenicity. Journal of Experimental Botany,2007,58:3351-3360.
Tombuloglu H, Kekec G, Sakcali MS, Unver T. Transcriptome-wide identification of R2R3-MYB transcription factors in barley with their boron responsive expression analysis. Molecular Genetics and Genomics,2013,29.
Turner JG, Ellis C, Devoto A. The jasmonate signal pathway. The Plant Cell,2002,14 Suppl:S153-64.
van Doom WG, Woltering EJ. Senescence and programmed cell death:substance or semantics? Journal of Experimental Botany,2004,55,2147-2154.
Wahl R, Wippel K, Goos S, Kamper J, Sauer N. A novel high-affinity sucrose transporter is required for virulence of the plant pathogen Ustilago maydis. PLOS Biology,2010, 8(2):e 1000303.
Wang N, Huang HJ, Ren ST, Li JJ, Sun Y, Sun DY, Zhang SQ. The rice wall-associated receptor-like kinase gene OsDEES1 plays a role in female gametophyte development. Plant Physiology,2012,160(2):696-707.
Wang S, Kurepa J, Hashimoto T, Smalle JA. Salt stress-induced disassembly of Arabidopsis cortical microtubule arrays involves 26S proteasome-dependent degradation of SPIRAL1. The Plant Cell,2011,3(9):3412-27.
Wang WS, Pan YJ, Zhao XQ, Dwivedi D, Zhu LH, Ali J, Fu BY, Li ZK. Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.). Journal of Experimental Botany,2011,62(6):1951-60.
Wang X, Wang X, Duan Y, Yin S, Zhang H, Huang L, Kang Z. TaAbc1, a Member of Abel-Like Family Involved in Hypersensitive Response against the Stripe Rust Fungal Pathogen in Wheat. PLoS One,2013,8(3):e58969.
Wang Z, Gerstein M, Snyder M. RNA-Seq:a revolutionary tool for transcriptomics. Nature Reviews Genetics,2009,10(1):57-63.
Wen Y, Wang W, Feng J, Luo MC, Tsuda K, Katagiri F, Bauchan G, Xiao S. Identification and utilization of a sow thistle powdery mildew as a poorly adapted pathogen to dissect post-invasion non-host resistance mechanisms in Arabidopsis. Journal of Experimental Botany, 2011,62(6):2117-29.
Wu J, Steinebrunner I, Sun Y, Butterfield T, Torres J, Arnold D, Gonzalez A, Jacob F, Reichler S, Roux SJ. Apyrases (nucleoside triphosphate-diphosphohydrolases) play a key role in growth control in Arabidopsis. Plant Physiology,2007,144(2):961-75.
Wu X, Knapp S, Stamp A, Stammers DK, Jornvall H, Dellaporta SL, Oppermann U. Biochemical characterization of TASSELSEED 2, an essential plant short-chain dehydrogenase/reductase with broad spectrum activities. FEBS Journal,2007,274(5):1172-82.
Yamada M, Kiyosawa S, Yamaguchi T, Hirano T, Kobayashi T, Kashibuchi K, Watanabe S. Proposal of a new method for differentiating races of Pyricularia oryzae Cavara in Japan. Annals of the Phytopathological Society of Japan,1976,42:216-219.
Yu J, Hu S, Wang J et al. A draft sequence of the rice genome(Oryza sativa L.ssp indica). Science, 2002,296:79-92.
Zaltsman A, Krichevsky A, Loyter A, Citovsky V. Agrobacterium induces expression of a host F-box protein required for tumorigenicity. Cell Host & Microbe,2010,7(3):197-209.
Zhang DB, Luo X, Zhu L. Cytological analysis and genetic control of rice anther development. Journal of Genetics and Genomics,2011,38:379-390.
Zhang H, Wang S. Rice versus Xanthomonas oryzae pv. oryzae:a unique pathosystem. Current Opinion in Plant Biology,2013,4:S1369-5266.
Zhang L, Gao M, Hu J, Zhang X, Wang K, Ashraf M. Modulation Role of Abscisic Acid (ABA) on Growth, Water Relations and Glycinebetaine Metabolism in Two Maize(Zea mays L.) Cultivars under Drought Stress. International Journal of Molecular Sciences,2012,13(3): 3189-202.
Zhang L, Xiao S, Li W, Feng W, Li J, Wu Z, Gao X, Liu F, Shao M. Overexpression of a Harpin-encoding gene hrfl in rice enhances drought tolerance. Journal of Experimental Botany, 2011,62(12):4229-38.
Zhang Q. Strategies for developing green super rice. Proceedings of the national Academy of Sciences,2007, (104):164-166.
Zhou YL, Pan YJ, Xie XW, Zhu LH, Xu JL, Wang S, Li ZK. Genetic diversity of rice false smut fungus, Ustilaginoidea virens, and its pronoemced differentiation of populations in north China. Journal of Phytopathology,2008,156:559-564.
Zhou YL, Izumitsu K, Sonoda R. PCR-based technique for specific detection of Ustilaginoidea virens and Ephelis japonica. Journal of Phytopathology,2003,151:513-518.
Zielinski RE. Calmodulin and calmodulin-binding proteins in plants. Annual Review of Plant Physiology and Plant Molecular Biology,1998,49:697-727.
Zou J, Liu C, Chen X. Proteomics of rice in response to heat stress and advances in genetic engineering for heat tolerance in rice. Plant Cell Reports,2011,30(12):2155-65.
Zurbriggen MD, Carrillo N, Tognetti VB, Melzer M, Peisker M, Hause B, Hajirezaei MR. Chloroplast-generated reactive oxygen species play a major role in localized cell death during the non-host interaction between tobacco and Xanthomonas campestris pv. vesicatoria. The Plant Journal,2009,60(6):962-73.