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中国汉族人群AGTR1基因与心肌梗死的关联研究tagging SNP选择和单体型分析
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摘要
研究背景和目的
     一直以来,肾素-血管紧张素系统(RAS)都被认为与高血压、心肌肥大和冠心病的发病机制密切相关。血管紧张素Ⅱ(ANG Ⅱ)是RAS系统最主要的生物活性产物,具有血管收缩、醛固酮释放、细胞增生以及细胞外周基质蛋白合成与积聚等多种功能。已知ANG Ⅱ的大多数生物学效应通过血管紧张素Ⅱ-1型受体(AT1受体)介导实现。鉴于该受体的生物学功能,编码AT1受体的基因(AGTR1)已成为高血压和冠心病遗传危险因素研究的重要候选基因。近些年来,有大量研究探讨AGTR1基因遗传变异同多种心血管事件的关系,但结果存在争议。本课题拟采用多阶段病例.对照研究策略,首先在中国汉族人群系统筛查AGTR1基因所有潜在功能性变异,阐明连锁不平衡模式和单体型分布,选择国人AGTR1基因tSNP;进而在病例-对照中充分探讨这些tSNP及其单体型和心肌梗死的关联,以期明确AGTR1基因与中国汉族人群心肌梗死发生的关系。
     材料和方法
     随机入选1997年10月至2000年9月期间阜外心血管病医院收治的居住在北京地区的急性心肌梗死男性患者419例。所有患者均发病3个月或3个月以上,且病情稳定,并经各项检查排除心脏瓣膜疾病、先天性心脏病、心力衰竭、严重的肾脏及肝脏疾病、继发性高血压、心肌病、家族性高胆固醇血症和严重肝肾及甲状腺疾病患者。随机选择居住在北京,年龄(±2岁)与病例匹配的社区人群400例健康男性做为对照组。对照组入选标准:既往无心脏病史,无胸痛、胸闷等心脏病症状且心脏查体正常,心电图无明显异常。参加者均详细填写调查表,包括疾病个人史、家族史、吸烟与饮酒史和药物使用情况,并测量血压、身高、体重、腰围及臀围以及血浆脂质等各项生化指标。所有研究对象均为汉族且无血缘关系。随机选取48例无血缘关系的病例样本,利用基因组DNA直接测序的方法筛查AGTR1基因外显子、启动子以及部分内含子区域的全部序列变异。计算常见SNP(少见等位基因频率>5%)的连锁不平衡系数D’和r~2,通过tagSNPs和htSNP2软件包选择tagging SNP(tSNP)。在819例研究对象中,以PCR-RFLP方法鉴定tSNP基因型。方差分析及X~2检验用于单变量分析,多元线性回归分析
Background
    The renin-angiotensin system (RAS) is implicated in the pathogenesis of hypertension, cardiac hypertrophy and coronary heart disease. The major biologically active product of the RAS is angiotensin II (ANG II), a peptide with multiple functions, including vasoconstriction, aldosterone production, hypertrophic and hyperplastic effects on vascular smooth muscle cells and cardiomyocytes, and synthesis of the extracellular collagen matrix. In adult humans, the effects of ANG II are mainly mediated by the angiotensin II type 1 receptor (AT1R). Because of the physiological role of this receptor, the AT1R gene (AGTR1) has been a candidate gene for hypertension and coronary heart disease. The contributions of variants of AGTR1 gene to cardiovascular diseases are conflicted in previous reports. In the present study, a multi-step case-control study was designed for evaluating the contribution of AGTR1 variations to myocardial infarction (MI) in Chinese Han population. We first scanned the AGTR1 gene to identify all putative functional polymorphisms within a sub-sample. The pattern of linkage disequilibrium across the whole gene was characterized and tSNPs were selected. Then these tSNPs were further genotyped in the entire study population. Both locus-based and haplotype-based association tests were used to evaluate the possible effect of AGTR1 gene on MI.
    Methods
    A total of 419 males who survived an acute MI were eligible for this study. They were enrolled from Fu Wai Hospital & Cardiovascular Institute (Beijing, China) between October 1997 and September 2000. Diagnoses of all cases in this study follow strict diagnostic rules based on signs, symptoms, electrocardiograms and cardiac enzymes. Subjects with congenital heart disease, cardiomyopathy, valvular disease, and renal or hepatic disease were excluded. Age-matched (± 2 years) male
引文
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    http://www.well.ox.ac.uk/asthma/GOLD; GOLD software.
    http://www-gene.cimr.cam.ac.uk/clayton/software/; SNPHAP software.
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