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鸡CACNA1S基因的多态性及其与肉质和屠体性状的关联性研究
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摘要
本研究以萧山鸡、仙居鸡、灵昆鸡、萧山鸡×仙居鸡杂交F1代、爱拔益加鸡(分别简称XS、XJ、LK、XS×XJ、AA,下同)五种鸡共142只个体为供试群体,采用克隆测序首次得到了鸡L型钙离子通道α1亚单位编码基因(CACNA1S)的5'-UTR~exon1序列。利用PCR-SSCP技术,研究了鸡该区域的SNPs及其与肉质和屠体性状的关联性。结果如下:
     (1)通过克隆测序首次获得了鸡CACNA1S基因5'-UTR~exon1共1863bp的序列(GenBank登录号:GQ184725),从而完善了Genbank中关于CACNA1S基因的收录。
     (2)PCR-SSCP结果表明:5'-UTR发现有4个SNPs位点:213(C→T)、551(G→A)、716(C插入/缺失)、1711(C→G)。当551位点(G→A),调控元件HSF的顺序发生了变化;当1711位点(C→G),调控元件由ADR1变为ADR1、M2F1、STRE和GATA-1。
     (3)SNPs213和SNPs716位点分别发现有AA、BB和JJ,KK两种基因型,群体基因频率分别为0.2254、0.7746和0.5141、0.4859;SNPs551和SNPs1711分别发现MM、MN、MN和XX、XY、YY三种基因型,群体基因频率分别为0.4683、0.5317和0.4648、0.5352。SNPs213、SNPs551位点XS、XS×XJ、AA三个群体为低度多态(PIC<0.25),其余两个群体为中度多态(0.25<PIC<0.50)。SNPs551、SNPs1711位点整个供试群体都为中度多态(0.25<PIC<0.50)。
     (4)最小二乘分析和显著性检验表明:SNPs551 NN和MN基因型的IMP含量极显著(P<0.01)大于MM型,NN和MN基因型的IMF含量显著(P<0.05)大于MM型,NN基因型的Glu含量极显著(P<0.01)大于MN、MM型。SNPs716位点JJ基因型的胸肌率极显著(P<0.01)大于KK型,KK基因型的IMP和Glu含量极显著(P<0.01)大于JJ型,JJ基因型的IMF含量极显著(P<0.01)大于KK型。SNPs1711位点YY基因型的全净膛率和胸肌率显著(P<0.05)大于XY和XX型,YY和XY基因型的半净膛率极显著(P<0.01)大于XX型,YY和XY基因型的胸肌率极显著(P<0.01)大于XX型。YY基因型的IMF含量显著(P<0.05)大于XY和XX型,YY基因型的Glu含量显著(P<0.05)大于XY和XX型。可考虑将CACNA1S基因作为影响鸡肉质和屠体性状的候选基因。
142 chickens from 5 populations(Xiaoshan chicken:XS;Xianju chicken:XJ;Linkun chicken:LK;Xiaoshan chicken×Xianju chicken F1:XS×XJ;AA chicken:AA)were studied.5'-UTR~exon1 sequence of(calcium channel,voltage-dependent,L type,alpha 1S subunit)CACNA1S gene of chicken was cloned and sequenced for the first time (GenBank Accession Number:GQ184725).Single nucleotide polymorphism in the coding sequence of CACNA1S gene was detected by PCR-SSCP and DNA sequencing in 5 breeds and the effect of genotypes on meat quality and carcass traits was studied by GLM analysis.The results were as follows:
     (1) 5'-UTR~exon1 sequence of CACNA1S gene of chicken was cloned for the first time,and it was 1863bp in length(Genbank No:GQ184725).
     (2) 4 SNPs sites in 5'-UTR of CACNA1S gene were determind:213(C→T)、551(G→A)、716(C insert/deletion)、1711(C→G).When 551(G→A),regulatory element HSF have priority,and when 1711(C→G),regulatory element ADR1 becomes to ADR1、M2F1、STRE and GATA-1.
     (3) It is showed that 2 allele(denoted as A、B and J、K) and 2 genotype(denoted as AA、BB and JJ、KK)was detected in SNPs213 and SNPs716 site,the frequency of 2 allele and 2 genes was 0.2254、0.7746 and 0.5141、0.4859 respectively;2 allele(denoted as M、N and X、Y) and 2 genotype(denoted as MM、MN、NN and XX、XY、YY)was detected in SNPs551 and SNPs1711 site,the frequency of 2 allele and 2 gene was 0.4683、0.5317 and 0.4648、0.5352 respectively.PIC value of 3 populations(XS、XS×XJ、AA) in SNPs213 and SNPs551 was less than 0.25,it is low polymorphism.PIC value of Others are medium polymer.
     (4) The results showed that the least squares means(LSM) of BMP had very significant difference between JJ and KK genotype(P<0.01) in SNPs716,the least squares means(LSM) of EP、BMP、SEP had very significant difference between YY,XYand XX genotype(P<0.01) in SNPs1711,the least squares means(LSM) of IMP、IMF、Glu had significant difference between MM、MNand NN genotype(P<0.05) in SNPs551,the least squares means(LSM) of IMP、IMF、Glu had very significant difference between JJ and KK genotype(P<0.01) in SNPs716,the least squares means(LSM) of IMF、Glu had significant difference between JJ and KK genotype(P<0.05) in SNPs1711.The CACNA1S gene could be a candidate modifier gene that affect or control the meat quality and carcass traits of chicken.
引文
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