大豆生育期E1、E2、E3和E4基因的研究与应用
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摘要
大豆E1～E4基因作为对大豆生育期影响最大的E系列基因,与大豆品种生态类型密切相关。为总结大豆主要生育期基因E1～E4的研究进展和应用现状,促进中国大豆生育期育种模式的形成,本研究综述E1～E4基因不同变异类型、变异类型鉴定方法和调控大豆光周期机理的研究进展及大豆群体E1～E4基因型分析在大豆品种生长适应性研究中的应用,以期为大豆生育期遗传调控机理的全面深入研究提供参考,同时为适应不同生态区域的大豆遗传育种工作提供依据。
Of the E-series gene,E1-E4 genes affect on soybean growth periods greatly and are closely related to the ecological type of soybean variety.In order to summarize the research progress and application status of the main growth stage gene E1-E4 of soybean and promote the formation of soybean breeding pattern in China,this study overviews different genotypes and genotyping methods and of E1-E4 genes.The applications of E1-E4 genotype information of soybean population on growth adaptation analysis are also summarized.This review can provide guidance on the research of genetic regulation mechanism of soybean growth period,and theoretical basis on genetic breeding of soybeans cultivars adapting to different ecological areas.
Of the E-series gene,E1-E4 genes affect on soybean growth periods greatly and are closely related to the ecological type of soybean variety.In order to summarize the research progress and application status of the main growth stage gene E1-E4 of soybean and promote the formation of soybean breeding pattern in China,this study overviews different genotypes and genotyping methods and of E1-E4 genes.The applications of E1-E4 genotype information of soybean population on growth adaptation analysis are also summarized.This review can provide guidance on the research of genetic regulation mechanism of soybean growth period,and theoretical basis on genetic breeding of soybeans cultivars adapting to different ecological areas.
引文
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[5]邱丽娟,韩天富,常汝镇.大豆遗传育种学家王金陵[J].遗传,2010,32(10):979-980Qiu L J,Han T F,Chang R Z.Soybean geneticist Wang jinling[J].Hereditas,2010,32(10):979-980(in Chinese)
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[7]盖钧镒,汪越胜.中国大豆品种生态区域划分的研究[J].中国农业科学,2001,34(2):139-145Gai J Y,Wang Y S,A study on the varietal eco-regions of soybean in China[J].Scientia Agricultura Sinica,2001,34(2):139-145(in Chinese)
[8]Bernard R L.Two major genes for time of flowering and maturity in soybeans[J].Crop Science,1971,11(2):242-244
[9]Abe J,Xu D,Miyano A,Komatsu K,Kanazawa?A,Shimamoto Y.Photoperiod-insensitive Japanese soybean landraces differ at two maturity loci[J].Crop Science,2003,43(4):1300-1304
[10]Buzzell R I.Inheritance of a soybean flowering response to fluorescent day length conditions[J].Canadian Journal Genetics and Cytology,1971,13(4):703-707
[11]Buzzell R I,Voldeng H D.Inheritance of insensitivity to long day length[J].Soybean Genet News,1980,7:26-29
[12]McBlain B A,Bernard R L.A new gene affecting the time of flowering and maturity in soybean[J].Journal of Heredity,1987,78(3):160-162
[13]Bonato E R,Vello N A.E6,a dominant gene conditioning early flowering and maturity in soybeans[J].Genetics and Molecular Biology,1999,22(2):229-232
[14]Cober E R,Voldeng H D.A new soybean maturity and photoperiod sensitive locus linked to E1and T[J].Crop Science,2001,41(3):698-701
[15]Cober E R,Molnar S J,Charette M,Voldeng H D.A new locus for early maturity in soybean[J].Crop Science,2010,50(2):524-527
[16]Zhao C,Takeshima R,Zhu J H.A recessive allele for delayed flowering at the soybean maturity locus E9is a leaky allele of FT2a,a Flowering Locust ortholog[J].Plant Biology,2016,16(1):20
[17]Samanfar B,Molnar S J,Charette M.Mapping and identification of a potential candidate gene for a novel maturity locus,E10,in soybean[J].Theoretical and Applied Genetics,2017,130(2):377-390
[18]Ray J D,Hinson K,Mankono E B,Malo M F.Genetic control of a long juvenile trait in soybean[J].Crop Science,1995,35(4):1001-1006
[19]Cober E R,Morrison M J.Regulation of seed yield and agronomic characters by photoperiod sensitivity and growth habit genes in soybean[J].Theoretical and Applied Genetics,2010,120(5):1005-1012
[20]Xia Z J,Watanabe S,Yamada T,Tsubokura Y,Nakashima H,Zhai H,Anai T,Sato S,Yamazaki T,Lyu S X,Wu HY,Tabata S,Haradab K.Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1that regulates photoperiodic flowering[J].Proceedings of the National Academy of Sciences of the United States of America,2012,109(32):E2155-2164
[21]Watanabe S,Xia Z,Hideshima R,Tsubokura Y,Sato S,Yamanaka N,Takahashi R,Anai T,Tabata S,Kitamura K,Harada K.A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEAgene is involved in soybean maturity and flowering[J].Genetics,2011,188(2):395-407
[22]Watanabe S,Hideshima R,Xia Z J,Tsubokura Y,Sato S,Nakamoto Y,Yamanaka N,Takahashi R,Ishimoto M,Anai T,Tabata S,Harada K.Map based cloning of the gene associated with the soybean maturity locus E3[J].Genetics,2009,182(4):1251-1262
[23]Liu B,Kanazawa A,Matsumura H,Takahashi R,Harada K,Abe J.Genetic redundancy in soybean photoresponses associated with duplication of the phytochrome A gene[J].Genetics,2008,180(2):995-1007
[24]Lu S J,Zhao X H,Hu Y L,Liu S L,Nan H Y,Li X M,Fang C,Cao D,Shi X Y,Kong L P,Su T,Zhang F G,Li SC,Wang Z,Yuan X H,Cober E R,Weller J L,Liu B H,Hou X L,Tian Z X,Kong F J.Natural variation at the soybean J locus improves adaptation to the tropics and enhances yield[J].Nature Genetics,2017,49(5):773-779
[25]Cober E R,Tanner J W,Voldeng H D.Soybean photoperiod-sensitivity loci respond differentially to light quality[J].Crop Science,1996,36(3):606-610
[26]Zhang X Z,Zhai H,Wang Y Y,Tian X J,Zhang Y P,Wu H Y,LüS X,Yang G,Li Y Q,Wang L,Hu B,Bu Q Y,Xia Z J.Functional conservation and diversification of the soybean maturity gene E1and its homologs in legumes[J].Scientific Reports,(2016-12-24)DOI:10.1038/srep295486
[27]Upadhyay A,Summerfield R H,Ellis R H,Roberts E H,Qi A.Variation in the durations of the photoperiod-sensitive and photoperiod-insensitive phases of development to flowering among 8 maturity isolines of soybean[Glycine max(L)Merrill][J].Annals of Botany,1994,74(1):97-101
[28]Liu B,Kanazawa A,Matsumura H,Takahashi R,Harada K.Genetic redundancy in soybean photoresponses associated with duplication of the phytochrome A gene[J].Genetics,2008,180(2):996-1007
[29]Zhai H,LüS X,Wu H Y,Zhang Y P,Zhang X Z,Yang JY,Wang Y Y,Yang G,Qiu H M,Cui T T,Xia Z J.Diurnal expression pattern,allelic variation,and association analysis reveal functional features of the E1gene in control of photoperiodic flowering in soybean[J].PLoS ONE,(2015-10-08)DOI:10.1371/journal.pone.0135909.eCollection2015
[30]Tsubokura Y,Watanabe S,Xia Z J,Kanamori H,Yamagata H,Kaga A,Katayose Y,Abe J,Ishimoto M,Harada K.Natural variation in the genes responsible for maturity loci E1,E2,E3and E4in soybean[J].Annals of Botany,2014,113(3):429-441
[31]Xu M L,Xu Z H,Liu B H,Kong F J,Tsubokura Y,Watanabe S,Xia Z J,Harada K,Kanazawa A,Yamada T,Abe J.Genetic variation in four maturity genes affects photoperiod insensitivity and PHYA-regulated post-flowering responses of soybean[J].Plant Biology,2013,13(1):91
[32]Tsubokura Y,Matsumura H,Xu M L,Liu B H,Nakashima H,Anai T,Kong F J,Yuan X H,Kanamori H,Katayose Y,Takahashi R,Harada K,Abe J.Genetic variation in soybean at the maturity locus E4is involved in adaptation to long days at high latitudes[J].Agronomy,2013,3(1):117-134
[33]Harada K,Watanabe S,Xia Z,Tsubokura Y,Yamanaka N,Anai T.In Soybean-genetics and Novel Techniques for Yield Enhancement:Positional Cloning of the Responsible Genes for Maturity Loci E1,E2 and E3 in Soybean[M].America:InTech,2011
[34]Jiang B J,Nan H Y,Gao Y F,Tang L L,Yue Y L,Lu S J,Ma L M,Cao D,Sun S,Wang J L,Wu C X,Yuan X H,Hou W S,Kong F J,Han T F,Liu B H.Allelic combinations of soybean maturity Loci E1,E2,E3and E4result in diversity of maturity and adaptation to different latitudes[J].PLoS ONE,(2014-09-08)DOI:10.1371/journal.pone.0106042.eCollection 2014
[35]Kanazawa A,Liu B H,Kong F J,Arase S,Abe J.Adaptive evolution involving gene duplication and insertion of a novel Ty1/copia-like retrotransposon in soybean[J].Journal of Molecular Evolution,2009,69(2):164-175
[36]Gupta S,Bhatia V S,Kumawat G,Thakur D,Singh G,Tripathi R,Satpute G,Devadas R,Husain S M,Chand S.Genetic analyses for deciphering the status and role of photoperiodic and maturity genes in major Indian soybean cultivars[J].Journal of Genetics and Genomics,2017,96(1),147-154
[37]Li J C,Wang X B,Song W W,Huang X Y,Zhou J,Zeng HY,Sun S,Jia H C,Li W B,Zhou X N,Li S Z,Chen P Y,Wu C X,Guo Y,Han T F,Qiu L J.Genetic variation of maturity groups and four Egenes in the Chinese soybean mini core collection[J].PLoS ONE,(2017-12-02)DOI:10.1371/journal.pone.0172106.eCollection 2017
[38]Kurasch A K,Hahn V,Leiser W L,Vollmann J,Schori A,Bétrix C A,Mayr B,Winkler J,Mechtler K,Aper J,Sudaric A,Pejic I,Sarcevic H,Jeanson P,Balko C,Signor M,Miceli F,Strijk P,Rietman H,Muresanu E,Djordjevic V,Pospisˇil A,Barion G,Weigold P,Streng S,Kr9n M,Würschum T.Identification of mega-environments in Europe and effect of allelic variation at maturity Eloci on adaptation of European soybean[J].Plant,Cell&Environment,2017,40(5):765-778
[39]Abugalieva S,Didorenko S,Anuarbek S,Volkova L,Gerasimova Y,Sidorik I,Turuspekov Y.Assessment of soybean flowering and seed maturation time in different latitude regions of Kazakhstan[J].PLoS ONE,(2016-11-12)DOI:10.1371/journal.pone.0166894.eCollection 2016
[40]Zhou Z K,Jiang Y,Wang Z,Gou Z H,Lyu J,Li W Y,Yu Y J,Shu L P,Zhao Y J,Ma Y M,Fang C,Shen Y T,Liu T F,Li C C,Li Q,Wu M,Wang M,Wu Y S,Dong Y,Wan W T,Wang X,Ding Z L,Gao Y D,Xiang H,Zhu BG,Lee S H,Wang W,Tian Z X.Resequencing 302wild and cultivated accessions identifies genes related to domestication and improvement in soybean[J].Nat Biotechnol,2015,33(4):408-414
[41]Xia Z J,Zhai H,LüS X.Recent achievement in gene cloning and functional genomics in soybean[J].The Scientific World Journal,(2013-9-18)DOI:10.1155/2013/281367
[2]Jia H C,Jiang B J,Wu C X,Lu W C,Hou W S,Sun S,Yan H R,Han T F.Maturity group classification and maturity locus genotyping of early-maturing soybean varieties from high-latitude cold regions[J].PLoS ONE,(2014-09-04)DOI:10.1371/journal.pone.0094139.eCollection 2014
[3]Zhai H,LüS X,Wang Y Q,Chen X,Ren H X,Yang J Y,Cheng W,Zong C M,Gu H P,Qiu H M,Wu H Y,Zhang XZ,Cui T T,Xia Z J.Allelic variations at four major maturity E genes and transcriptional abundance of the E1 gene are associated with flowering time and maturity of soybean cultivars[J].PLoS ONE,(2014-09-05)DOI:10.1371/journal.pone.0097636.eCollection 2014
[4]Owen F V.Inheritance studies in soybeans.II.Glabrousness,color of pubescence,time of maturity,and linkage relations[J].Genetics,1927,12(2):519-529
[5]邱丽娟,韩天富,常汝镇.大豆遗传育种学家王金陵[J].遗传,2010,32(10):979-980Qiu L J,Han T F,Chang R Z.Soybean geneticist Wang jinling[J].Hereditas,2010,32(10):979-980(in Chinese)
[6]王金陵.大豆遗传与选种[M].北京:科学出版社,1958Wang J L.Soybean Heredity and Selection[M].Beijing:Science Press,1958(in Chinese)
[7]盖钧镒,汪越胜.中国大豆品种生态区域划分的研究[J].中国农业科学,2001,34(2):139-145Gai J Y,Wang Y S,A study on the varietal eco-regions of soybean in China[J].Scientia Agricultura Sinica,2001,34(2):139-145(in Chinese)
[8]Bernard R L.Two major genes for time of flowering and maturity in soybeans[J].Crop Science,1971,11(2):242-244
[9]Abe J,Xu D,Miyano A,Komatsu K,Kanazawa?A,Shimamoto Y.Photoperiod-insensitive Japanese soybean landraces differ at two maturity loci[J].Crop Science,2003,43(4):1300-1304
[10]Buzzell R I.Inheritance of a soybean flowering response to fluorescent day length conditions[J].Canadian Journal Genetics and Cytology,1971,13(4):703-707
[11]Buzzell R I,Voldeng H D.Inheritance of insensitivity to long day length[J].Soybean Genet News,1980,7:26-29
[12]McBlain B A,Bernard R L.A new gene affecting the time of flowering and maturity in soybean[J].Journal of Heredity,1987,78(3):160-162
[13]Bonato E R,Vello N A.E6,a dominant gene conditioning early flowering and maturity in soybeans[J].Genetics and Molecular Biology,1999,22(2):229-232
[14]Cober E R,Voldeng H D.A new soybean maturity and photoperiod sensitive locus linked to E1and T[J].Crop Science,2001,41(3):698-701
[15]Cober E R,Molnar S J,Charette M,Voldeng H D.A new locus for early maturity in soybean[J].Crop Science,2010,50(2):524-527
[16]Zhao C,Takeshima R,Zhu J H.A recessive allele for delayed flowering at the soybean maturity locus E9is a leaky allele of FT2a,a Flowering Locust ortholog[J].Plant Biology,2016,16(1):20
[17]Samanfar B,Molnar S J,Charette M.Mapping and identification of a potential candidate gene for a novel maturity locus,E10,in soybean[J].Theoretical and Applied Genetics,2017,130(2):377-390
[18]Ray J D,Hinson K,Mankono E B,Malo M F.Genetic control of a long juvenile trait in soybean[J].Crop Science,1995,35(4):1001-1006
[19]Cober E R,Morrison M J.Regulation of seed yield and agronomic characters by photoperiod sensitivity and growth habit genes in soybean[J].Theoretical and Applied Genetics,2010,120(5):1005-1012
[20]Xia Z J,Watanabe S,Yamada T,Tsubokura Y,Nakashima H,Zhai H,Anai T,Sato S,Yamazaki T,Lyu S X,Wu HY,Tabata S,Haradab K.Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1that regulates photoperiodic flowering[J].Proceedings of the National Academy of Sciences of the United States of America,2012,109(32):E2155-2164
[21]Watanabe S,Xia Z,Hideshima R,Tsubokura Y,Sato S,Yamanaka N,Takahashi R,Anai T,Tabata S,Kitamura K,Harada K.A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEAgene is involved in soybean maturity and flowering[J].Genetics,2011,188(2):395-407
[22]Watanabe S,Hideshima R,Xia Z J,Tsubokura Y,Sato S,Nakamoto Y,Yamanaka N,Takahashi R,Ishimoto M,Anai T,Tabata S,Harada K.Map based cloning of the gene associated with the soybean maturity locus E3[J].Genetics,2009,182(4):1251-1262
[23]Liu B,Kanazawa A,Matsumura H,Takahashi R,Harada K,Abe J.Genetic redundancy in soybean photoresponses associated with duplication of the phytochrome A gene[J].Genetics,2008,180(2):995-1007
[24]Lu S J,Zhao X H,Hu Y L,Liu S L,Nan H Y,Li X M,Fang C,Cao D,Shi X Y,Kong L P,Su T,Zhang F G,Li SC,Wang Z,Yuan X H,Cober E R,Weller J L,Liu B H,Hou X L,Tian Z X,Kong F J.Natural variation at the soybean J locus improves adaptation to the tropics and enhances yield[J].Nature Genetics,2017,49(5):773-779
[25]Cober E R,Tanner J W,Voldeng H D.Soybean photoperiod-sensitivity loci respond differentially to light quality[J].Crop Science,1996,36(3):606-610
[26]Zhang X Z,Zhai H,Wang Y Y,Tian X J,Zhang Y P,Wu H Y,LüS X,Yang G,Li Y Q,Wang L,Hu B,Bu Q Y,Xia Z J.Functional conservation and diversification of the soybean maturity gene E1and its homologs in legumes[J].Scientific Reports,(2016-12-24)DOI:10.1038/srep295486
[27]Upadhyay A,Summerfield R H,Ellis R H,Roberts E H,Qi A.Variation in the durations of the photoperiod-sensitive and photoperiod-insensitive phases of development to flowering among 8 maturity isolines of soybean[Glycine max(L)Merrill][J].Annals of Botany,1994,74(1):97-101
[28]Liu B,Kanazawa A,Matsumura H,Takahashi R,Harada K.Genetic redundancy in soybean photoresponses associated with duplication of the phytochrome A gene[J].Genetics,2008,180(2):996-1007
[29]Zhai H,LüS X,Wu H Y,Zhang Y P,Zhang X Z,Yang JY,Wang Y Y,Yang G,Qiu H M,Cui T T,Xia Z J.Diurnal expression pattern,allelic variation,and association analysis reveal functional features of the E1gene in control of photoperiodic flowering in soybean[J].PLoS ONE,(2015-10-08)DOI:10.1371/journal.pone.0135909.eCollection2015
[30]Tsubokura Y,Watanabe S,Xia Z J,Kanamori H,Yamagata H,Kaga A,Katayose Y,Abe J,Ishimoto M,Harada K.Natural variation in the genes responsible for maturity loci E1,E2,E3and E4in soybean[J].Annals of Botany,2014,113(3):429-441
[31]Xu M L,Xu Z H,Liu B H,Kong F J,Tsubokura Y,Watanabe S,Xia Z J,Harada K,Kanazawa A,Yamada T,Abe J.Genetic variation in four maturity genes affects photoperiod insensitivity and PHYA-regulated post-flowering responses of soybean[J].Plant Biology,2013,13(1):91
[32]Tsubokura Y,Matsumura H,Xu M L,Liu B H,Nakashima H,Anai T,Kong F J,Yuan X H,Kanamori H,Katayose Y,Takahashi R,Harada K,Abe J.Genetic variation in soybean at the maturity locus E4is involved in adaptation to long days at high latitudes[J].Agronomy,2013,3(1):117-134
[33]Harada K,Watanabe S,Xia Z,Tsubokura Y,Yamanaka N,Anai T.In Soybean-genetics and Novel Techniques for Yield Enhancement:Positional Cloning of the Responsible Genes for Maturity Loci E1,E2 and E3 in Soybean[M].America:InTech,2011
[34]Jiang B J,Nan H Y,Gao Y F,Tang L L,Yue Y L,Lu S J,Ma L M,Cao D,Sun S,Wang J L,Wu C X,Yuan X H,Hou W S,Kong F J,Han T F,Liu B H.Allelic combinations of soybean maturity Loci E1,E2,E3and E4result in diversity of maturity and adaptation to different latitudes[J].PLoS ONE,(2014-09-08)DOI:10.1371/journal.pone.0106042.eCollection 2014
[35]Kanazawa A,Liu B H,Kong F J,Arase S,Abe J.Adaptive evolution involving gene duplication and insertion of a novel Ty1/copia-like retrotransposon in soybean[J].Journal of Molecular Evolution,2009,69(2):164-175
[36]Gupta S,Bhatia V S,Kumawat G,Thakur D,Singh G,Tripathi R,Satpute G,Devadas R,Husain S M,Chand S.Genetic analyses for deciphering the status and role of photoperiodic and maturity genes in major Indian soybean cultivars[J].Journal of Genetics and Genomics,2017,96(1),147-154
[37]Li J C,Wang X B,Song W W,Huang X Y,Zhou J,Zeng HY,Sun S,Jia H C,Li W B,Zhou X N,Li S Z,Chen P Y,Wu C X,Guo Y,Han T F,Qiu L J.Genetic variation of maturity groups and four Egenes in the Chinese soybean mini core collection[J].PLoS ONE,(2017-12-02)DOI:10.1371/journal.pone.0172106.eCollection 2017
[38]Kurasch A K,Hahn V,Leiser W L,Vollmann J,Schori A,Bétrix C A,Mayr B,Winkler J,Mechtler K,Aper J,Sudaric A,Pejic I,Sarcevic H,Jeanson P,Balko C,Signor M,Miceli F,Strijk P,Rietman H,Muresanu E,Djordjevic V,Pospisˇil A,Barion G,Weigold P,Streng S,Kr9n M,Würschum T.Identification of mega-environments in Europe and effect of allelic variation at maturity Eloci on adaptation of European soybean[J].Plant,Cell&Environment,2017,40(5):765-778
[39]Abugalieva S,Didorenko S,Anuarbek S,Volkova L,Gerasimova Y,Sidorik I,Turuspekov Y.Assessment of soybean flowering and seed maturation time in different latitude regions of Kazakhstan[J].PLoS ONE,(2016-11-12)DOI:10.1371/journal.pone.0166894.eCollection 2016
[40]Zhou Z K,Jiang Y,Wang Z,Gou Z H,Lyu J,Li W Y,Yu Y J,Shu L P,Zhao Y J,Ma Y M,Fang C,Shen Y T,Liu T F,Li C C,Li Q,Wu M,Wang M,Wu Y S,Dong Y,Wan W T,Wang X,Ding Z L,Gao Y D,Xiang H,Zhu BG,Lee S H,Wang W,Tian Z X.Resequencing 302wild and cultivated accessions identifies genes related to domestication and improvement in soybean[J].Nat Biotechnol,2015,33(4):408-414
[41]Xia Z J,Zhai H,LüS X.Recent achievement in gene cloning and functional genomics in soybean[J].The Scientific World Journal,(2013-9-18)DOI:10.1155/2013/281367
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