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1.In silico characterization of TTHA0596: A potential Zn^{2 +} binding protein of ATP-binding cassette transporter

作者：Suraj Kumar Mandal ; Monika Chandravanshi ; Prerana Gogoi ; Shankar Prasad Kanaujia ; ^{spkanaujia@iitg.ernet.in} ; ^{spkanaujia@gmail.com}

关键词：APBS ; adaptive Poisson Boltzmann solver ; ATP ; ATP-binding cassette ; Fe ; iron ; HP ; hypothetical protein ; Mn ; manganese ; MSA ; multiple sequence alignment ; NBD ; nucleotide binding domain ; ORF ; open reading frame ; PMBP ; periplasmic metal binding protein ; RMSD ; root mean square deviation ; SBP ; substrate binding protein ; TMD ; transmembrane domain ; Zn ; zinc

刊名：Gene Reports

出版年：2017

2.Tetrodotoxin- and tributyltin-binding abilities of recombinant pufferfish saxitoxin and tetrodotoxin binding proteins of Takifugu rubripes

作者：Hina Satone^a ; Shohei Nonaka^b ; Jae Man Lee^c ; Yohei Shimasaki^b ; Takahiro Kusakabe^c ; Shun-ichiro Kawabata^d ; Yuji Oshima^b ; ^{yoshima@agr.kyushu-u.ac.jp}

关键词：Pufferfish saxitoxin and tetrodotoxin binding proteins ; Tetrodotoxin ; Binding assay

刊名：Toxicon

出版年：2017

3.Development of predictive models for predicting binding affinity of endocrine disrupting chemicals to fish sex hormone-binding globulin

作者：Huihui Liu^a ; ^{hhliu@njust.edu.cn} ; Xianhai Yang^b ; ^{xhyang@nies.org} ; Cen Yin^a ; Mengbi Wei^a ; Xiao He^a

关键词：Endocrine disrupting chemicals (EDCs) ; Fish sex hormone-binding globulin (fSHBG) ; Quantitative structure-activity relationship (QSAR) ; Classification model ; Relative binding affinity (RBA)

刊名：Ecotoxicology and Environmental Safety

出版年：2017

4.Signal and binding. II. Converting physico-chemical responses to macromolecule-ligand interactions into thermodynamic binding isotherms

作者：Wlodzimierz Bujalowski^a ; ^b ; ^{wbujalow@utmb.edu} ; Maria J. Jezewska^a ; Paul J. Bujalowski^a

关键词：Physico-chemical titrations ; Binding isotherms ; Thermodynamics

刊名：Biophysical Chemistry

出版年：2017

5.Computing the binding affinity of a ligand buried deep inside a protein with the hybrid steered molecular dynamics

作者：Oscar D. Villarreal^a ; ¹ ; Lili Yu^a ; ^b ; ¹ ; Roberto A. Rodriguez^a ; Liao Y. Chen^a ; ^{Liao.Chen@utsa.edu}

关键词：Binding affinity ; Retinol-binding protein ; Ligand-protein interaction ; T4-lysozyme mutants ; Molecular dynamics

刊名：Biochemical and Biophysical Research Communications

出版年：2017

6.Structural analysis of Ca²⁺-binding pocket of synaptotagmin 5 C2A domain

作者：Xiaoting Qiu^a ; ^b ; ^c ; ^d ; Junyi Ge^a ; ^b ; Yongxiang Gao^c ; ^d ; Maikun Teng^c ; ^d ; ^{mkteng@ustc.edu.cn} ; Liwen Niu^c ; ^d ; ^{lwniu@ustc.edu.cn}

关键词：Synaptotagmin C2 domain ; Ca2+-binding pocket ; Ca2+-binding mechanism

刊名：International Journal of Biological Macromolecules

出版年：2017

7.Structural and binding studies of a C-type galactose-binding lectin from Bothrops jararacussu snake venom

作者：Marco A. Sartim^a ; ¹ ; Matheus P. Pinheiro^b ; ¹ ; Ricardo A.P. de Pá ; dua^b ; ¹ ; Suely V. Sampaio^a ; M. Cristina Nonato^b ; ^{cristy@fcfrp.usp.br}

关键词：Snake venom ; Galactoside-binding lectin ; Bothrops jararacussu ; X-ray crystallography ; Thermofluor

刊名：Toxicon

出版年：2017

8.Determination of binding modes and binding constants for the complexes of 6H-pyrido[4,3-b]carbazole derivatives with DNA

作者：Akihito Shimazu^a ; Masashi Kawagoshi^a ; Shoichi Takeda^a ; Haruaki Kurasaki^a ; Asako Kato^a ; Nahoko Morii^b ; Norio Sakai^a ; Takeo Konakahara^a ; ^{konaka@rs.noda.tus.ac.jp}

关键词：Ellipticine ; 6H-Pyrido[4 ; 3-b]carbazole ; DNA ; Intercalation ; Binding constant ; QCM ; Deflection spectroscopy ; Molecular modeling ; GC base-pair preference ; Salt effects ; pH dependence ; Cytotoxic activity

刊名：Bioorganic & Medicinal Chemistry

出版年：2017

9.Phosphorylation of poly(rC) binding protein 1 (PCBP1) contributes to stabilization of mu opioid receptor (MOR) mRNA via interaction with AU-rich element RNA-binding protein 1 (AUF1) and poly A binding protein (PABP)

作者：Cheol Kyu Hwang ; Yadav Wagley ; ^{ywagley@umn.edu} ; Ping-Yee Law ; Li-Na Wei ; Horace H. Loh

关键词：PCBP1 ; poly(rC) binding protein 1 ; MOR ; mu opioid receptor ; AUF1 ; AU-rich element RNA-binding protein 1 ; PABP ; poly (A)-binding protein ; 3&prime ; -UTR ; 3&prime ; -untranslated region ; PKA ; protein kinase A ; PKC ; protein kinase C ; CRE ; C-rich element ; RNA-EMSA ; RNA electrophoretic mobility shift assay ; ARE ; AU-rich elements ; hnRNPs ; heterogeneous nuclear ribonucleoproteins ; HuR ; human antigen R ; RNPs ; ribonucleoproteins ; ILEI ; interleukin-like EMT inducer ; Dab2 ; disabled-2 ; STR ; short tandem repeats

刊名：Gene

出版年：2017

10.Calcium-independent binding of human C-reactive protein to lysophosphatidylcholine in supported planar phospholipid monolayers

作者：Tatsuro Goda ; ^{goda.bsr@tmd.ac.jp} ; Yuji Miyahara

关键词：C-reactive protein ; Phosphatidylcholine ; Lysophosphatidylcholine ; Binding kinetics ; Surface plasmon resonance

刊名：Acta Biomaterialia

出版年：2017

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