作者：Erich D Jarvis (1)
Siavash Mirarab (2)
Andre J Aberer (3)
Bo Li (4) (5) (6)
Peter Houde (7)
Cai Li (4) (6)
Simon Y W Ho (8)
Brant C Faircloth (10) (9)
Benoit Nabholz (11)
Jason T Howard (1)
Alexander Suh (12)
Claudia C Weber (12)
Rute R da Fonseca (6)
Alonzo Alfaro-N煤帽ez (6)
Nitish Narula (13) (7)
Liang Liu (14)
Dave Burt (15)
Hans Ellegren (12)
Scott V Edwards (16)
Alexandros Stamatakis (17) (3)
David P Mindell (18)
Joel Cracraft (19)
Edward L Braun (20)
Tandy Warnow (2)
Wang Jun (21) (22) (23) (24) (4)
M Thomas Pius Gilbert (25) (6)
Guojie Zhang (26) (4)
The Avian Phylogenomics Consortium

1. Department of Neurobiology ; Howard Hughes Medical Institute and Duke University Medical Center ; Durham ; NC ; 27710 ; USA
2. Department of Computer Science ; The University of Texas at Austin ; Austin ; TX ; 78712 ; USA
3. Scientific Computing Group ; Heidelberg Institute for Theoretical Studies ; Heidelberg ; Germany
4. China National GeneBank ; BGI-Shenzhen ; Shenzhen ; 518083 ; China
5. College of Medicine and Forensics ; Xi鈥檃n Jiaotong University ; Xi鈥檃n ; 710061 ; China
6. Centre for GeoGenetics ; Natural History Museum of Denmark ; University of Copenhagen ; 脴ster Voldgade 5-7 ; 1350 ; Copenhagen ; Denmark
7. Department of Biology ; New Mexico State University ; Las Cruces ; NM ; 88003 ; USA
8. School of Biological Sciences ; University of Sydney ; Sydney ; NSW ; 2006 ; Australia
10. Department of Biological Sciences ; Louisiana State University ; Baton Rouge ; LA ; 70803 ; USA
9. Department of Ecology and Evolutionary Biology ; University of California Los Angeles ; Los Angeles ; CA ; 90095 ; USA
11. CNRS UMR 5554 ; Institut des Sciences de l鈥橢volution de Montpellier ; Universit茅 Montpellier II ; Montpellier ; France
12. Department of Evolutionary Biology ; Uppsala University ; SE-752 36 ; Uppsala ; Sweden
13. Biodiversity and Biocomplexity Unit ; Okinawa Institute of Science and Technology Onna-son ; Okinawa ; 904-0495 ; Japan
14. Department of Statistics and Institute of Bioinformatics ; University of Georgia ; Athens ; 30602 ; USA
15. Department of Genomics and Genetics ; The Roslin Institute and Royal (Dick) School of Veterinary Studies ; University of Edinburgh ; Easter Bush Campus ; Midlothian ; EH25 9RG ; UK
16. Department of Organismic and Evolutionary Biology and Museum of Comparative Zoology ; Harvard University ; Cambridge ; MA ; USA
17. Institute of Theoretical Informatics ; Department of Informatics ; Karlsruhe Institute of Technology ; D- 76131 ; Karlsruhe ; Germany
18. Department of Biochemistry & Biophysics ; University of California ; San Francisco ; CA ; 94158 ; USA
19. Department of Ornithology ; American Museum of Natural History ; New York ; NY ; 10024 ; USA
20. Department of Biology and Genetics Institute ; University of Florida ; Gainesville ; FL ; 32611 ; USA
21. Department of Biology ; University of Copenhagen ; Ole Maal酶es Vej 5 ; 2200 ; Copenhagen ; Denmark
22. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders ; King Abdulaziz University ; Jeddah ; 21589 ; Saudi Arabia
23. Macau University of Science and Technology ; Avenida Wai long ; Taipa ; Macau ; 999078 ; China
24. Department of Medicine ; University of Hong Kong ; Hong Kong ; Hong Kong
25. Trace and Environmental DNA Laboratory Department of Environment and Agriculture ; Curtin University ; Perth ; WA ; 6102 ; Australia
26. Centre for Social Evolution ; Department of Biology ; Universitetsparken 15 ; University of Copenhagen ; DK-2100 ; Copenhagen ; Denmark

关键词：Avian genomes ; Phylogenomics ; Sequence alignments ; Species tree ; Gene trees ; Indels ; Transposable elements

刊名：GigaScience

出版年：2015

作者：Shancen Zhao (1) (2)
Fengya Zheng (1)
Weiming He (2)
Haiyang Wu (2)
Shengkai Pan (1)
Hon-Ming Lam (1)

1. Centre for Soybean Research ; Partner State Key Laboratory of Agrobiotechnology ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong
2. BGI-Shenzhen ; Main Building ; Beishan Industrial Zone ; Yantian District ; Shenzhen ; 518083 ; China

关键词：Soybean domestication ; Genetic improvement ; Artificial selection ; Nucleotide fixation ; Plant ; pathogen interaction

刊名：BMC Plant Biology

出版年：2015

作者：Shaoke Lou (1) (2)
Heung-Man Lee (3) (4) (5)
Hao Qin (2)
Jing-Woei Li (2)
Zhibo Gao (6)
Xin Liu (6)
Landon L Chan (1) (2)
Vincent KL Lam (3) (4) (5)
Wing-Yee So (3) (4) (5)
Ying Wang (3) (4) (5)
Si Lok (7)
Jun Wang (10) (6) (8) (9)
Ronald CW Ma (3) (4) (5)
Stephen Kwok-Wing Tsui (11) (12) (13)
Juliana CN Chan (3) (4) (5)
Ting-Fung Chan (12) (13) (2)
Kevin Y Yip (1) (12) (13) (4)

1. Department of Computer Science and Engineering ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong
2. School of Life Sciences ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong
3. Department of Medicine and Therapeutics ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong
4. Hong Kong Institute of Diabetes and Obesity ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong
5. Li Ka Shing Institute of Health Sciences ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong
6. Beijing Genomics Institute (BGI)-Shenzhen ; Shenzhen ; China
7. Department of Chemical Pathology ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong
10. King Abdulaziz University ; Jeddah ; Saudi Arabia
8. Department of Biology ; University of Copenhagen ; Copenhagen ; Denmark
9. The Novo Nordisk Foundation Center for Basic Metabolic Research ; University of Copenhagen ; Copenhagen ; Denmark
11. School of Biomedical Sciences ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong
12. Hong Kong Bioinformatics Centre ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong
13. CUHK-BGI Innovation Institute of Trans-omics ; The Chinese University of Hong Kong ; Shatin ; New Territories ; Hong Kong

刊名：Genome Biology

出版年：2014

作者：Suchit Jhunjhunwala (1)
Zhaoshi Jiang (1)
Eric W Stawiski (1) (2)
Florian Gnad (1)
Jinfeng Liu (1)
Oleg Mayba (1)
Pan Du (1)
Jingyu Diao (3)
Stephanie Johnson (4)
Kwong-Fai Wong (5)
Zhibo Gao (6)
Yingrui Li (6)
Thomas D Wu (1)
Sharookh B Kapadia (3)
Zora Modrusan (2)
Dorothy M French (4)
John M Luk (5) (7) (8)
Somasekar Seshagiri (2)
Zemin Zhang (1)

1. Department of Bioinformatics and Computational Biology ; Genentech Inc. ; South San Francisco ; CA ; 94080 ; USA
2. Department of Molecular Biology ; Genentech Inc. ; South San Francisco ; CA ; 94080 ; USA
3. Department of Infectious diseases ; Genentech Inc. ; South San Francisco ; CA ; 94080 ; USA
4. Department of Pathology ; Genentech Inc. ; South San Francisco ; CA ; 94080 ; USA
5. Department of Surgery ; University of Hong Kong ; Pokfulam ; Hong Kong
6. BGI-Shenzhen ; Shenzhen ; 518083 ; China
7. Department of Pharmacology ; National University of Singapore ; Singapore ; 117597 ; Singapore
8. Institute of Molecular and Cell Biology ; A*STAR ; 61 Biopolis Drive ; Singapore ; 138673 ; Singapore

刊名：Genome Biology

出版年：2014