De novo transcriptome analysis of the Siberian apricot (Prunus sibirica L.) and search for potential SSR markers by 454 pyrosequencing
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- 作者：Shubin Donga ; Yulin Liub ; Jun Niua ; Yu Ninga ; Shanzhi Linb ; Zhixiang Zhanga ; zxzhang@bjfu.edu.cn" class="auth_mail
- 关键词：ACP ; acyl carrier protein ; BLAST ; basic local alignment search tool ; CDD ; Conserved Domain Database ; COG ; cluster of orthologous group ; EST ; expressed sequence tag ; GAPDH ; glyceraldehyde-3-phosphate dehydrogenase ; GO ; gene ontology ; KEGG ; Kyoto Encyclopedia of Genes and Genomes ; NCBI ; National Center for Biotechnology Information ; SSRs ; simple sequence repeats
- 刊名：Gene
- 出版年：10 July 2014
- 年：2014
- 卷：544
- 期：2
- 页码：220-227
- 全文大小：591 K
文摘
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The results of transcriptome sequencing in the Siberian apricot were discussed first.
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1,243,067 high-quality reads and 46,940 unigenes were obtained.
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191 unigenes involved in biosynthesis and catabolism of fatty acids were identified.
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7304 potential SSRs were identified and their tandem repeats were analyzed.
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These data will be very useful for future research of these plants.