Generalized Simpson-diversity

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• 作者：Hans-Rolf Gregorius ; Elizabeth M. Gillet
• 关键词：Simpson ; Diversity ; Continuous-trait ; Effective number ; Resolution ; Multiple-loci ; Beta-diversity ; Clustering ; Wild cherry
• 刊名：Ecological Modelling
• 出版年：2008
• 出版时间：24 February 2008
• 年：2008
• 卷：211
• 期：1-2
• 页码：90-96
• 全文大小：375 K

文摘

Simpson’s index of diversity equals the probability of drawing without replacement two individuals of different type from a given collection. The interpretation of its inverse as the effective number of types reflects the biological meaning of diversity as the multiformity of the collection. The effective number of types is maximal, equalling the total number of types, only if all types are uniformly distributed. Simpson’s diversity thus fulfills one of the most basic conceptual criteria for diversity measures. The criterion does not, however, directly carry over to continuously varying differences between types. It is shown that the common practice of taking averages or special sums of differences cannot serve as the desired generalization. In a new approach, the probabilistic interpretation of Simpson’s index is used to extend the basic criterion of diversity to arbitrary differences between types, thereby retaining the concept of effective number. By considering b364cb7c82b723"" title=""Click to view the MathML source"">ρ as the resolution at which differences between individuals distinguish them, we define diversity as the probability of sampling without replacement two individuals that differ by more than ρ. It is pointed out that this measure generalizes the classical Simpson-criterion of diversity in that it applies to any decomposition of the collection into groups, such that individuals within a group differ by at most ρ and between groups by at least ρ. Maximum diversity is reached if all groups are of equal size. This maximum property of the new measure motivates definition of the effective number of types at resolution 90b99391ba623c3d"" title=""Click to view the MathML source"">ρ independently of any particular decomposition into groups and while maintaining the basic diversity criterion. The advantages of and new insights to be derived from this scale-free measure are demonstrated by suggesting an approach to 0b3dc27"">-diversity in ecology that is consistent with the criterion of diversity and by providing a worked example in population genetics using multiple-loci microsatellite data from three wild cherry populations. The example shows that gene associations may strongly affect the ranking of populations for genetic diversity.