Examples of testing global identifiability of biological and biomedical models with the DAISY software

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• 作者：Maria Pia Saccomani ; Stefania Audoly ; Giuseppina Bellu ; Leontina D’ ; Angiò
• 关键词：Biological models ; Nonlinear dynamic systems ; A priori identifiability ; Parameter estimation ; Software tool
• 刊名：Computers in Biology and Medicine
• 出版年：2010
• 出版时间：April 2010
• 年：2010
• 卷：40
• 期：4
• 页码：402-407
• 全文大小：209 K

文摘

DAISY (Differential Algebra for Identifiability of SYstems) is a recently developed computer algebra software tool which can be used to automatically check global identifiability of (linear and) nonlinear dynamic models described by differential equations involving polynomial or rational functions. Global identifiability is a fundamental prerequisite for model identification which is important not only for biological or medical systems but also for many physical and engineering systems derived from first principles. Lack of identifiability implies that the parameter estimation techniques may not fail but any obtained numerical estimates will be meaningless.

The software does not require understanding of the underlying mathematical principles and can be used by researchers in applied fields with a minimum of mathematical background.

We illustrate the DAISY software by checking the a priori global identifiability of two benchmark nonlinear models taken from the literature. The analysis of these two examples includes comparison with other methods and demonstrates how identifiability analysis is simplified by this tool. Thus we illustrate the identifiability analysis of other two examples, by including discussion of some specific aspects related to the role of observability and knowledge of initial conditions in testing identifiability and to the computational complexity of the software. The main focus of this paper is not on the description of the mathematical background of the algorithm, which has been presented elsewhere, but on illustrating its use and on some of its more interesting features.

DAISY is available on the web site http://www.dei.unipd.it/pia/.