In the salmon, total tract digestibility of nitrogen and dry matter were lower (p < 0.05) with the SBM and ROM diets than with the ISP diet. In the chickens, ileal digestibility of dry matter differed among all treatments (p < 0.05). Digestibility of nitrogen, starch, phosphorus and calcium in the chickens was lower (p < 0.05) with the SBM diet than with the ISP and SPC diets, and fat digestibility was lower (p < 0.05) with the SBM and ROM diets than with the SPC diet. Also, the SBM diet gave lower (p < 0.05) digestibility of nitrogen, phosphorus and calcium than the ROM diet, while the ROM diets gave lower (p < 0.05) digestibilities of nitrogen, fat and starch than the ISP and SPC diets. Intestinal viscosity was higher (p < 0.05) and cholesterol content in the blood was lower (p < 0.05) for the chickens fed the SBM-based diet than those fed the other diets. There was a similar response to the different soy products in salmon and chickens with regard to digestibility of nitrogen and fat (p < 0.05). The negative effects of soyabean meals with a low protein content could indicate antinutritive effects of NSP fractions in soyabean meal, as indicated by the elevated viscosity and the decrease in blood cholesterol content.