The design and operation of a high altitude scientific balloon requires adequate knowledge of the thermal characteristics of the balloon to make it safe and reliable. The thermal models and dynamic models of altitude scientific balloons are established in this paper. Based on the models, a simulation program is developed. The thermal performances of a super pressure balloon are simulated. The influence of film radiation property and clouds on balloon thermal behaviors is discussed in detail. The results are helpful for the design and operate of safe and reliable high altitude scientific balloons.