The surface-enhanced Raman scattering study of cobalt phthalocyanine films demonstrates the strong dependence of Raman intensity of vibrational modes in cobalt phthalocyanine on the laser excitation wavelength as well as on the size and period of Au nanoclusters. By tuning the optical resonance conditions a maximal enhancement factor of 2 ¡Á 104 is achieved. The investigation of surface-enhanced Raman scattering by cobalt phthalocyanine deposited on laterally ordered arrays of paired Au nanoclusters (dimers) reveals anisotropic enhancement with respect to polarization of the scattered light parallel or perpendicular to the dimer axis.