Our study presents the revised faunal list of each Early Pleistocene levels from the localities of Gran Dolina (TD) and Sima del Elefante (TE), in Atapuerca. Both localities have very likely the richest associations of small mammal species in the Quaternary of Europe. Perhaps the most striking observation is the lack of similarities between the assemblages from each site, which can only be explained by a chronological gap between them. Although the Jaramillo subchron has not been directly identified at Atapuerca, the existing chronostratigraphical framework combined with similarities of the faunal assemblages between Gran Dolina and Vallparadís indicate with some confidence that Sima del Elefante levels are older than the Jaramillo subchron. Consequently, the Early Pleistocene levels of both Atapuerca sites TE and TD are the only sequence from Spain that allows the study of a continuous stratigraphic succession of the interval around the Jaramillo subchron in terrestrial sequences. The biostratigraphy of the Early Pleistocene from Europe, based mainly in the few isolated localities of the Olduvai–Jaramillo time interval, is reinforced by the faunal succession of the Atapuerca sites.