ClassRHO: A platform for classification of bacterial rieske non-heme iron ring-hydroxylating oxygenases
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- 作者：Songjoon Baek ; Ohgew Kweon ; Seong-Jae Kim ; Dong-Heon Baek ; James J. Chen ; Carl E. Cerniglia
- 关键词：RHO ; Classification ; PD matrix ; Sequence alignment
- 刊名：Journal of Microbiological Methods
- 出版年：2009
- 出版时间：March 2009
- 年：2009
- 卷：76
- 期：3
- 页码：307-309
- 全文大小：1702 K
文摘
We have developed an easy-to-use multiplatform classification tool, ClassRHO, which facilitates classification and comparison of bacterial Rieske non-heme iron aromatic ring-hydroxylating oxygenases (RHOs). Visualization and analysis can be generated on-the-fly by entering or uploading RHO query sequences. Pre-computed classifications were implemented for 42 standard RHO sequences. These 42 RHO sequences can be flexibly selected based on user requests. ClassRHO provides users with many options to view and analyze RHO sequences.