Transcriptome profiling and digital gene expression by deep sequencing in early somatic embryogenesis of endangered medicinal Eleutherococcus senticosus Maxim.
详细信息 查看全文
- 作者：Lei Taoa ; Yue Zhaoa ; Ying Wua ; Qiuyu Wanga ; Hongmei Yuanb ; Lijuan Zhaoc ; Wendong Guod ; Xiangling Youa ; yxiangling@yahoo.com" class="auth_mail" title="E-mail the corresponding author
- 关键词：GO ; Gene Ontology ; COGs ; Clusters of Orthologous Groups ; KEGG ; Kyoto Encyclopedia of Genes and Genomes ; SE ; Somatic embryogenesis ; EC ; Embryogenic callus ; YEC ; Yellow embryogenic callus ; GE ; Global embryo
- 刊名：Gene
- 出版年：2016
- 出版时间：1 March 2016
- 年：2016
- 卷：578
- 期：1
- 页码：17-24
- 全文大小：691 K
文摘
- •
We studied Eleutherococcus senticosus Maxim. early somatic embryogenesis regulation.
- •
High-throughput RNA sequencing of its transcriptome yielded 75,803 unigenes.
- •
Gene annotation showed that SE initiation affected gene expression in KEGG pathways.
- •
Viz., in metabolic pathways, secondary metabolite biosynthesis, hormone signaling
- •
The differentially expressed genes might be molecular markers of early SE.