Thirty six MIPs genes were identified in Morus notabilis genome. NPA motifs vary in three subfamilies except in PIP suggestive of lesser diversity in PIP sub family. Correlation between the cis elements, enriched GO terms and expression profiles were observed. Tissue specific expression of several MIPs in developmental stages were observed. Genotypes from different geographical regions exhibited differential expression of MIPs indicating their possible role in local adaptations.