The draft genome sequence of Mangrovibacter sp. strain MP23, an endophyte isolated from the roots of Phragmites karka

详细信息    查看全文

• 作者：Pratiksha Behera^a ; Parag Vaishampayan^b ; Nitin K. Singh^b ; Samir R. Mishra^c ; Vishakha Raina^c ; Mrutyunjay Suar^c ; Ajit K. Pattnaik^a ; Gurdeep Rastogi^a ; ^{rastogigurdeep@gmail.com" class="auth_mail" title="E-mail the corresponding author}
• 关键词：Mangrovibacter sp. ; Phragmites karka ; Draft genome ; Chilika ; Endophyte
• 刊名：Genomics Data
• 出版年：2016
• 出版时间：September 2016
• 年：2016
• 卷：9
• 期：Complete
• 页码：128-129
• 全文大小：163 K

文摘

Till date, only one draft genome has been reported within the genus Mangrovibacter. Here, we report the second draft genome shotgun sequence of a Mangrovibacter sp. strain MP23 that was isolated from the roots of Phargmites karka (P. karka), an invasive weed growing in the Chilika Lagoon, Odisha, India. Strain MP23 is a facultative anaerobic, nitrogen-fixing endophytic bacteria that grows optimally at 37 °C, 7.0 pH, and 1% NaCl concentration. The draft genome sequence of strain MP23 contains 4,947,475 bp with an estimated G + C content of 49.9% and total 4392 protein coding genes. The genome sequence has provided information on putative genes that code for proteins involved in oxidative stress, uptake of nutrients, and nitrogen fixation that might offer niche specific ecological fitness and explain the invasive success of P. karka in Chilika Lagoon. The draft genome sequence and annotation have been deposited at DDBJ/EMBL/GenBank under the accession number LYRP00000000.