A novel ensemble of classifiers that use biological relevant gene sets for microarray classification
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- 作者：Miguel Reboiro-Jato ; Fern ; o D铆az ; Daniel Glez-Pe帽a ; Florentino Fdez-Riverola
- 关键词：Microarray classification ; Biological knowledge ; Ensemble learning ; Knowledge integration ; Classifier fusion
- 刊名：Applied Soft Computing Journal
- 出版年：April, 2014
- 年：2014
- 卷：17
- 期：Complete
- 页码：117-126
- 全文大小：1744 K
文摘
Since the introduction of DNA microarray technology, there has been an increasing interest on clinical application for cancer diagnosis. However, in order to effectively translate the advances in the field of microarray-based classification into the clinic area, there are still some problems related with both model performance and biological interpretability of the results. In this paper, a novel ensemble model is proposed able to integrate prior knowledge in the form of gene sets into the whole microarray classification process. Each gene set is used as an informed feature selection subset to train several base classifiers in order to estimate their accuracy. This information is later used for selecting those classifiers comprising the final ensemble model. The internal architecture of the proposed ensemble allows the replacement of both base classifiers and the heuristics employed to carry out classifier fusion, thereby achieving a high level of flexibility and making it possible to configure and adapt the model to different contexts. Experimental results using different datasets and several gene sets show that the proposal is able to outperform classical alternatives by using existing prior knowledge adapted from publicly available databases.