Transcriptome analysis of Solanum melongena L. (eggplant) fruit to identify putative allergens and their epitopes
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- 作者：Kumar Ramagoni Ramesha ; ramagoninin@gmail.com" class="auth_mail" title="E-mail the corresponding author ; R. Hemalathaa ; rhemalathanin@gmail.com" class="auth_mail" title="E-mail the corresponding author ; Chary Anchoju Vijayendraa ; vijayendra111@gmail.com" class="auth_mail" title="E-mail the corresponding author ; Uz Zaman Syed Arshib ; arshi@nucleomeinfo.com" class="auth_mail" title="E-mail the corresponding author ; Singh Baghel Dushyantb ; dushyant@nucleomeinfo.com" class="auth_mail" title="E-mail the corresponding author ; Kumar Bharadwaj Dineshc ; nindineshpct@gmail.com" class="auth_mail" title="E-mail the corresponding author
- 关键词：NGS ; next generation sequencing ; GC ; Guanine and Cytosine ; Nr ; NCBI non-redundant protein database ; BLAST ; Basic Local Alignment Search Tool ; GO ; Gene Ontology ; PE ; paired end ; SE ; single end ; ESTs ; expressed sequence tags ; Nt ; nucleotide ; UniProt ; Universal Protein ; Gb ; gigabases ; % ; percentage ; bp ; base pairs
- 刊名：Gene
- 出版年：2016
- 出版时间：15 January 2016
- 年：2016
- 卷：576
- 期：1
- 页码：64-71
- 全文大小：1153 K
文摘
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Complete transcriptome catalogue of brinjal fruit was generated using NGS technology.
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Brinjal transcripts showed significant similarity with other plant proteins.
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Putative allergen sequences of eggplant matched with 48 different types of existing allergens.
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B-cell epitopes were identified using BepiPred linear epitope prediction tool.