A FASTQ compressor based on integer-mapped k-mer indexing for biologist
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- 作者：Yeting Zhanga ; yetingzhang@synblex.com" class="auth_mail" title="E-mail the corresponding author ; Khyati Patelb ; patkhyat@kean.edu" class="auth_mail" title="E-mail the corresponding author ; Tony Endrawisb ; endrawit@kean.edu" class="auth_mail" title="E-mail the corresponding author ; Autumn Bowersb ; bowersau@kean.edu" class="auth_mail" title="E-mail the corresponding author ; Yazhou Sunb ; ysun@kean.edu" class="auth_mail" title="E-mail the corresponding author
- 关键词：NGS ; next generation sequencing ; KIC ; K-mer Index Compressor ; GB ; gigabytes ; RNA-seq ; RNA sequencing ; GUI ; graphic user interface
- 刊名：Gene
- 出版年：2016
- 出版时间：15 March 2016
- 年：2016
- 卷：579
- 期：1
- 页码：75-81
- 全文大小：828 K
文摘
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An integer-mapped k-mer indexing method was applied to NGS sequence data compression.
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KIC, a user-friendly FASTQ compressor, was developed and thoroughly tested.
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The KIC method showed the highest compression ratio for FASTQ sequence data.
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KIC's overall performance is comparable to the latest dedicated compression tools.
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KIC has demonstrated outstanding reliability, user-friendliness, and compatibility.