Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA

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• 作者：Marina S. Ascunce^a ; ^b ; ¹ ; Jose C. Huguet-Tapia^a ; ¹ ; Edward L. Braun^c ; Almudena Ortiz-Urquiza^d ; Nemat O. Keyhani^d ; Erica M. Goss^a ; ^b ; ^{emgoss@ufl.edu" class="auth_mail" title="E-mail the corresponding author}
• 关键词：Oomycete ; Pythium insidiosum ; Pythiosis ; Human emerging pathogen ; Genome sequencing
• 刊名：Genomics Data
• 出版年：2016
• 出版时间：March 2016
• 年：2016
• 卷：7
• 期：Complete
• 页码：60-61
• 全文大小：178 K

文摘

Pythium insidiosum ATCC 200269 strain CDC-B5653, an isolate from necrotizing lesions on the mouth and eye of a 2-year-old boy in Memphis, Tennessee, USA, was sequenced using a combination of Illumina MiSeq (300 bp paired-end, 14 millions reads) and PacBio (10  Kb fragment library, 356,001 reads). The sequencing data were assembled using SPAdes version 3.1.0, yielding a total genome size of 45.6 Mb contained in 8992 contigs, N₅₀ of 13 Kb, 57% G + C content, and 17,867 putative protein-coding genes. This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession JRHR00000000.