Protein contact maps: A binary depiction of protein 3D structures

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• 作者：Isaac Arnold Emerson ; ^{i_arnoldemerson@yahoo.com" class="auth_mail" title="E-mail the corresponding author} ; Arumugam Amala
• 关键词：Protein structure prediction ; Contact map ; Complex network
• 刊名：Physica A: Statistical Mechanics and its Applications
• 出版年：2017
• 出版时间：1 January 2017
• 年：2017
• 卷：465
• 期：Complete
• 页码：782-791
• 全文大小：1787 K

文摘

In recent years, there has been a considerable interest in examining the structure and dynamics of complex networks. Proteins in 3D space may also be considered as complex systems emerged through the interactions of their constituent amino acids. This representation provides a powerful framework to uncover the general organized principle of protein contact network. Here we reviewed protein contact map in terms of protein structure prediction and analyses. In addition, we had also discussed the various computational techniques for the prediction of protein contact maps and the tools to visualize contact maps.