De novo assembly and characterization of tissue-specific transcriptome in the endangered golden mahseer, Tor putitora
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- 作者：Ashoktaru Barat ; Rohit Kumar ; Chirag Goel ; Atul Kumar Singh ; Prabhati Kumari Sahoo ; psahooin@yahoo.co.in" class="auth_mail" title="E-mail the corresponding author
- 关键词：Golden mahseer ; Endangered ; Organ-specific transcriptome ; SSR markers
- 刊名：Meta Gene
- 出版年：2016
- 出版时间：February 2016
- 年：2016
- 卷：7
- 期：Complete
- 页码：28-33
- 全文大小：1090 K
文摘
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Organ specific and concatenated transcriptome of 6 organs of golden mahseer was generated using illumina sequencing.
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A total of 100,540,130 high-quality paired-ends reads with 28.4 GB data that assembled into 77,907 contigs were obtained.
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Contigs were annotated using GO and KEGG pathway and organ-specific few genes were identified.
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Thirty four usable SSR markers were extracted from 2485 identified.