High-Resolution Expression Map of the Arabidopsis Root Reveals Alternative Splicing and lincRNA Regulation
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- 作者：Song Li1 ; 4 ; 5 ; Masashi Yamada1 ; 4 ; Xinwei Han1 ; Uwe Ohler2 ; 3 ; uwe.ohler@mdc-berlin.de" class="auth_mail" title="E-mail the corresponding author ; Philip N. Benfey1 ; 6 ; philip.benfey@duke.edu" class="auth_mail" title="E-mail the corresponding author
- 关键词：RNA-seq ; Arabidopsis ; alternative splicing ; lincRNA ; transcriptome ; proteome ; PacBio sequencing ; root development ; intron retention ; co-expression network
- 刊名：Developmental Cell
- 出版年：2016
- 出版时间：21 November 2016
- 年：2016
- 卷：39
- 期：4
- 页码：508-522
- 全文大小：4559 K
文摘
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Cell type expression analyses characterize alt splicing and lincRNAs
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Splicing tends to remove parts of coding regions from a longer, major isoform
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Coordinated alternative splicing appears to regulate differentiation in the root
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For the majority of proteins, peptide and major isoform abundance correlate well