Complete genome analysis of a rare G12P[6] rotavirus isolated in Thailand in 2012 reveals a prototype strain of DS-1-like constellation
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- 作者：Wilaiporn Saikruanga ; Pattara Khamrina ; Rungnapa Malasaob ; Kattareeya Kumthipa ; Hiroshi Ushijimac ; Niwat Maneekarna ; niwat.m@cmu.ac.th" class="auth_mail" title="E-mail the corresponding author
- 关键词：RVA ; species A rotaviruses ; VP ; viral protein ; NSP ; non-structural protein ; BLAST ; basic local alignment search tool ; RT-PCR ; reverse transcription polymerase chain reaction ; ML ; maximum likelihood ; AICc ; corrected Akaike information criterion ; tMRCA ; time of the most recent common ancestor ; ESS ; effective sample size ; MCMC ; Bayesian Markov Chain Monte Carlo ; HPD ; highest posterior density
- 刊名：Virus Research
- 出版年：2016
- 出版时间：15 September 2016
- 年：2016
- 卷：224
- 期：Complete
- 页码：38-45
- 全文大小：1597 K
文摘
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Analysis of whole genome sequence of human G12P[6] rotavirus CMHN49-12.
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CMHN49-12 exhibits genotype 2 in all non G, non P-genes.
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G12 rotaviruses in Thailand have at least three distinct VP7 gene ancestors.
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Evolution rate and time of most recent common ancestor were estimated.