Genome-wide functional analysis of SSR for an edible mushroom Pleurotus ostreatus
详细信息 查看全文
- 作者：Jibin Qu ; Chenyang Huang ; Jinxia Zhang ; zhangjinxia@caas.cn" class="auth_mail" title="E-mail the corresponding author
- 关键词：A ; adenosine ; Ala ; alanine ; Arg ; arginine ; Asn ; asparagine ; Asp ; aspartate ; bp ; base pair ; C ; cytidin ; Cys ; cysteine ; FDR ; false discovery rate ; G ; guanosine ; Gln ; glutamine ; Glu ; glutamate ; Gly ; glycine ; GO ; Gene Ontology ; His ; histidine ; Ile ; isoleucine ; KEGG ; Kyoto Encyclopedia of Genes and Genomes ; KOG ; eukaryotic orthologous groups ; Leu ; leucine ; Lys ; lysine ; Mbp ; mega base pair ; Met ; methionine ; nt ; nucleotide ; Phe ; phenylalanine ; Pro ; proline ; RAAs ; repeating amino acids ; Ser ; serine ; SSR
- 刊名：Gene
- 出版年：2016
- 出版时间：10 January 2016
- 年：2016
- 卷：575
- 期：2
- 页码：524-530
- 全文大小：852 K
文摘
- •
The distribution curves of SSRs and exons are opposite through the genome.
- •
SSR-containing genes uncovered enriched functions about environmental interactions and important functions for life.
- •
Trinucleotide SSRs account for an extremely high fraction of all SSRs.
- •
Comparative analysis of fungi suggests that Agaricomycotina fungi have similar SSR distribution and RAA distribution.