HaploSNP affinities and linkage map positions illuminate subgenome composition in the octoploid, cultivated strawberry (Fragaria × ananassa)
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- 作者：D.J. Sargenta ; 1 ; Y. Yangb ; 1 ; N. &Scaron ; urbanovskia ; L. Biancoa ; M. Butia ; R. Velascoa ; L. Giongoa ; T.M. Davisb
- 关键词：AFLP ; amplified fragment length polymorphisms ; CBT ; call rate below threshold ; Fvb ; Fragaria vesca subsp. bracteata ; FvH4 ; Fragaria vesca &lsquo ; Hawaii 4&rsquo ; HSV ; homoeologous sequence variant ; LG ; linkage group ; NMH ; no minor homozygote ; Mbp ; megabase pairs ; MHR ; mono high resolution ; OTV ; off target variant ; PHR ; polyhigh resolution ; QTL ; quantitative trait locus ; SNP ; single nucleotide polymorphism ; SSR ; simple sequence repeat (microsatellite) ; WGG ; whole genome genotyping
- 刊名：Plant Science
- 出版年：2016
- 出版时间：January 2016
- 年：2016
- 卷：242
- 期：Complete
- 页码：140-150
- 全文大小：2024 K
文摘
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The IStraw90® array was evaluated as a generic tool for linkage map development.
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A map with more than 8,000 markers spanning 28 linkage groups was constructed.
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Analysis of haploSNP markers identified F. vesca and F. iinumae sub-genomes
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A new model of subgenome composition and evolution was proposed