Effects of geological changes and climatic fluctuations on the demographic histories and low genetic diversity of Squaliobarbus curriculus in Yellow River

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• 作者：Wei Zhou^a ; Na Song^a ; Jun Wang^b ; Tianxiang Gao^c ; ^{gaotianxiang0611@163.com" class="auth_mail" title="E-mail the corresponding author}
• 关键词：h ; gene diversity or haplotype diversity ; π ; nucleotide diversity ; k ; mean number of pairwise nucleotide differences ; DT ; &ldquo ; decision-theoretic performance-based&rdquo ; ASDOSS ; average standard deviation of split support ; MST ; minimum spanning tree ; UMPT ; union of maximum parsimonious tree ; LGM ; last interglacial maximum
• 刊名：Gene
• 出版年：2016
• 出版时间：15 September 2016
• 年：2016
• 卷：590
• 期：1
• 页码：149-158
• 全文大小：979 K

文摘

The 104 samples of Squaliobarbus curriculus were collected from four localities in Yellow River and one region in Yangtze River. Analyses of the first hypervariable region of mitochondrial DNA control region of 555 bp revealed only 15 polymorphism sites and defined 19 haplotypes. Low-to-moderate levels of haplotype diversity and low nucleotide diversity were observed in Yellow River populations (h = 0.2529–0.7510, π = 0.0712%–0.2197%). In contrast, Poyang Lake population showed high haplotype diversity and lower-middle nucleotide diversity (h = 0.9636, π = 0.5317%). Low genetic differentiation was estimated among Yellow River populations and significant level of genetic structure was detected between two rivers. Population genetic structure between two rivers was believed to be connected with geographical barriers and paleoclimatic events. The demographic history of S. curriculus in Yellow River examined by neutrality tests, mismatch distribution analysis, and Bayesian skyline analysis suggested a sudden and spatial population expansion dating to the Holocene. Climatic warming and changes of Yellow River course may have important effects on demographic facet of S. curriculus history. The same signal was also obtained on Poyang Lake population in late Pleistocene during the last interglacial period. During the period, the pronounced climatic change and the water system variation of PYL may have an important influence on the population.