The identification of Lip1 and Lip2 was confirmed by using mass spectrometry approach and their characterization by molecular modeling approach. CD spectra and fluorescence showed differences in the secondary and tertiary structure; the apparent difference was the presence of 4 extra loops in Lip2 in contrast to Lip1 structure. The Edman degradation together with mass spectrometry revealed the presence of unique peptide AVGGGATLPEK in the novel lipase Lip3. The catalytic properties of the lipases were tested through hydrolysis of p-nitrophenyl esters, triacylglycerols and peracetylated thymidine esters. The enantioselectivity potential of purified lipases was studied for the hydrolyses of trans-2-(4-methoxybenzyl)-1-cyclohexyl acetate, where Lip3 was the only active lipase with an excellent selectivity (eep > 99%, E = 372). The all three purified lipases from G. candidum 4013 have shown promising catalytic properties with biotechnological application.