Energy efficiency of sequence alignment tools—Software and hardware perspectives
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- 作者：Michał Kierzynkaa ; b ; michal.kierzynka@man.poznan.pl" class="auth_mail" title="E-mail the corresponding authorAuthor Vitae ; Lars KosmanncAuthor Vitae ; Micha vor dem BergedAuthor Vitae ; Stefan KrupopdAuthor Vitae ; Jens HagemeyereAuthor Vitae ; René ; GriessleAuthor Vitae ; Meysam PeykanueAuthor Vitae ; Ariel Oleksiaka ; bAuthor Vitae
- 关键词：Sequence alignment ; Energy efficiency ; FiPS project ; Heterogeneous hardware ; Bioinformatics ; FPGA
- 刊名：Future Generation Computer Systems
- 出版年：2017
- 出版时间：February 2017
- 年：2017
- 卷：67
- 期：Complete
- 页码：455-465
- 全文大小：1607 K
文摘
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A comparative study of pairwise sequence alignment tools is presented.
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Considerable differences in energy efficiency between individual tools are reported.
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The proposed FPGA implementation outperforms other tools on energy efficiency front.
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Newly developed RECS®|Box hardware is presented with its monitoring infrastructure.