Partially disordered three-dimensional photonic crystals (PCs) were fabricated by self-assembly of small polystyrene spheres doped with large fluorescent spheres. Photoluminescence measurements show that the introduced disorder largely affects the spontaneous emission (SE) behaviors of the fluorescent spheres. Two pronounced emission peaks found at 565 nm and 620 nm gradually merge into one emission peak with the doping concentration increase from 0.02 wt % to 0.20 wt % , accompanied by the red-shift of the main emission peak. The dynamic modification of SE originates from the deterioration of stop band of PCs due to the disorder aggravated by increasing the doping concentration. The efficient modification on the emission intensity and frequency indicates potential applications in random lasing.