Genomic variation in recently collected maize landraces from Mexico

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• 作者：Mar&iacute ; a Clara Arteaga^a ; ¹ ; ^{mariaclaraarteaga@yahoo.com" class="auth_mail" title="E-mail the corresponding author} ; Alejandra Moreno-Letelier^b ; ¹ ; ^{almolet@gmail.com" class="auth_mail" title="E-mail the corresponding author} ; Alicia Mastretta-Yanes^c ; ^{amastretta@conabio.gob.mx" class="auth_mail" title="E-mail the corresponding author} ; ^{a.mstt.yanes@gmail.com" class="auth_mail" title="E-mail the corresponding author} ; Alejandra Vá ; zquez-Lobo^e ; ^{ale.lobo17@gmail.com" class="auth_mail" title="E-mail the corresponding author} ; Alejandra Bre&ntilde ; a-Ochoa^e ; ^{alesaurus_bo@yahoo.com" class="auth_mail" title="E-mail the corresponding author} ; André ; s Moreno-Estrada^d ; ² ; ^{amoreno@langebio.cinvestav.mx" class="auth_mail" title="E-mail the corresponding author} ; Luis E. Eguiarte^e ; ^{fruns@unam.mx" class="auth_mail" title="E-mail the corresponding author} ; Daniel Pi&ntilde ; ero^e ; ^{pinero@unam.mx" class="auth_mail" title="E-mail the corresponding author}
• 关键词：Maize ; Teosinte ; Maize SNP50K BeadChip ; Mexican landraces ; Proyecto Global de Ma&iacute ; ces Nativos
• 刊名：Genomics Data
• 出版年：2016
• 出版时间：March 2016
• 年：2016
• 卷：7
• 期：Complete
• 页码：38-45
• 全文大小：2129 K

文摘

The present dataset comprises 36,931 SNPs genotyped in 46 maize landraces native to Mexico as well as the teosinte subspecies Zea maiz ssp. parviglumis and ssp. mexicana. These landraces were collected directly from farmers mostly between 2006 and 2010. We accompany these data with a short description of the variation within each landrace, as well as maps, principal component analyses and neighbor joining trees showing the distribution of the genetic diversity relative to landrace, geographical features and maize biogeography. High levels of genetic variation were detected for the maize landraces (H_E = 0.234 to 0.318 (mean 0.311), while slightly lower levels were detected in Zea m. mexicana and Zea m. parviglumis (H_E = 0.262 and 0.234, respectively). The distribution of genetic variation was better explained by environmental variables given by the interaction of altitude and latitude than by landrace identity. This dataset is a follow up product of the Global Native Maize Project, an initiative to update the data on Mexican maize landraces and their wild relatives, and to generate information that is necessary for implementing the Mexican Biosafety Law.