Parallel consideration of SSRs and differentially expressed genes under abiotic stress for targeted development of functional markers in almond and related Prunus species
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- 作者：Arghavan Alisoltania ; 1 ; Shekoufeh Ebrahimia ; 1 ; Sahar Azariana ; 1 ; Mahsa Hematyara ; 1 ; Behrouz Shirana ; b ; shiran@agr.sku.ac.ir" class="auth_mail" title="E-mail the corresponding author ; beshiran45@gmail.com" class="auth_mail" title="E-mail the corresponding author ; Hassan Jahanbazic ; Hossein Fallahid ; Sadegh Mousavi-Farde ; Fariba Rafieia
- 关键词：DE ; differential expression ; EST ; expressed sequence tag ; MAS ; marker assisted selection ; RNA-Seq ; RNA sequencing ; SSR ; simple sequence repeat
- 刊名：Scientia Horticulturae
- 出版年：2016
- 出版时间：26 January 2016
- 年：2016
- 卷：198
- 期：Complete
- 页码：462-472
- 全文大小：2084 K
文摘
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Extraction of DE genes with SSRs to obtain functional biomarkers.
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RNA-Seq SSR analysis of normal and frost stress treated tissues.
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Calmodulin, trihelix transcription factor GT-1-like and delta-(8)-fatty-acid desaturase as potential markers for MAS.
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High polymorphism of RNA-Seq SSRs in population of P. arabica, P. scoparia and P. haussknechtii as well as P. dulcis.