Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum

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• 作者：Wei Wang ; Minxuan Xia ; Jie Chen ; Fenni Deng ; Rui Yuan ; Xiaopei Zhang ; Fafu Shen ; ^{ffshen@sdau.edu.cn}
• 关键词：Phylogenetic tree ; RAMPAGE Ramachandran plot analysis ; SOD ; Cotton
• 刊名：Data in Brief
• 出版年：2016
• 出版时间：December 2016
• 年：2016
• 卷：9
• 期：Complete
• 页码：345-348
• 全文大小：180 K
• 卷排序：9

文摘

The data presented in this paper is supporting the research article “Genome-Wide Analysis of Superoxide Dismutase Gene Family in Gossypium raimondii and G. arboreum” [1]. In this data article, we present phylogenetic tree showing dichotomy with two different clusters of SODs inferred by the Bayesian method of MrBayes (version 3.2.4), “Bayesian phylogenetic inference under mixed models” [2], Ramachandran plots of G. raimondii and G. arboreum SODs, the protein sequence used to generate 3D sructure of proteins and the template accession via SWISS-MODEL server, “SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information.” [3] and motif sequences of SODs identified by InterProScan (version 4.8) with the Pfam database, “Pfam: the protein families database” [4].