Genotypic diversity and migration patterns of Phytophthora?infestans in the Nordic countries

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• 作者：Lina Sj?holm ; Bj?rn Andersson ; Nils H?gberg ; Anna-Karin Widmark ; Jonathan Yuen
• 关键词：Effective population size ; Potato late blight ; Sexual reproduction ; Simple-sequence repeats (SSR) ; Stratified sampling
• 刊名：Fungal Biology
• 出版年：2013
• 出版时间：October, 2013
• 年：2013
• 卷：117
• 期：10
• 页码：722-730
• 全文大小：1235 K

文摘

In this study we investigated the genotypic diversity and the migration patterns of Phytophthora infestans in the Nordic countries. Isolates of P. infestans from outbreaks in 43 fields sampled in 2008 were collected using stratified sampling with country, field, and disease foci as the different strata. Microsatellites were used as markers to determine the genotypic variation in the sampled material. The results show a high genotypic variation of P. infestans in the Nordic countries with most of the genotypes found only once among the collected isolates. The major part of the genotypic variation was observed within the fields, with low differentiation between the fields. The observed low association of alleles among loci is consistent with frequent sexual reproduction of P. infestans in the Nordic countries. Coalescence analyses did not support a single common population for the four countries, thus indicating some degree of geographic differentiation. The analyses of migration patterns showed differing levels of gene flow among the Nordic countries. No correlation between migration rates and geographical distance could be seen. This could be explained by different degrees of genetic similarity between the pathogen populations in the different countries.