Tools for visualization and integration of intermediate sequencing results in large disease gene discovery projects
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- 作者：Rzhetsky ; Andrey ; Kalachikov ; Sergey ; Ye ; Xiaolu ; Zhang ; Peisen ; Russo ; James J.
- 关键词：Java applet ; World Wide Web ; HTML page ; Exon trapping ; cDNA ; BLAST hits ; DNA clones ; HTML ; hypertext markup language ; BAC ; bacterial artificial chromosome ; BLAST ; basic local alignment search tool ; dBEST ; database of expressed sequence tags ; dbSTS ; databa
- 刊名：Gene
- 出版年：1998
- 出版时间：February 16, 1998
- 年：1998
- 卷：208
- 期：1
- 页码：31-35
- 全文大小：532 K
文摘
We describe two Java applets which are useful for insightful presentation of intermediate experimental data in gene discovery projects involving large scale sequencing. One of these applets provides a physical map of a genomic region and provides easy access to the second applet, which furnishes a detailed map of sequence contigs associated with clones on the physical map. In particular, the second applet displays all the known information about each contig, including the presence of exons, database homology `hits', repetitive elements and other features; the graphics are linked to other World Wide Web pages, providing detailed information on each feature. These applets should be useful to other research groups working on large sequencing projects.