Genetic characterization and evolutionary analysis of Newcastle disease virus isolated from domestic duck in South Korea
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- 作者：Satish Gaikwad ; Ji-Ye Kim ; Hyun-Jeong Lee ; Suk Chan Jung ; Kang-Seuk Choi ; kchoi0608@korea.kr" class="auth_mail" title="E-mail the corresponding author
- 关键词：NDV ; Newcastle disease virus ; ICPI ; intracerebral pathogenicity index ; LBMs ; live-bird markets ; DK13 ; KR/duck/13/07 ; SPF ; specific pathogen free ; EID50 ; 50% egg infective dose ; MCMC ; Markov chain Monte Carlo ; ESS ; Effective sample size ; CDS ; coding sequence ; TMRCA ; time to most recent common ancestor ; HPD ; Highest posterior density
- 刊名：Gene
- 出版年：2016
- 出版时间：15 March 2016
- 年：2016
- 卷：579
- 期：1
- 页码：34-40
- 全文大小：901 K
文摘
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We present the complete genome sequence of NDV strain DK13 isolated in South Korea in the year 2007.
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We investigated the phylogenetic relationships of this virus with reference NDV strains.
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Categorized and classified DK13 strain as a lentogenic and a member of class II, genotype I.
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We determined its ancestral state location and year of TMRCA with sister strain.
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Understanding the evolutionary process of strains belonging to genotype I.