In silico identification of Bell pepper endornavirus from pepper transcriptomes and their phylogenetic and recombination analyses
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- 作者：Yeonhwa Joa ; Hoseong Choia ; Ju-Yeon Yoonb ; Seung-Kook Choib ; Won Kyong Choa ; wonkyong@gmail.com" class="auth_mail" title="E-mail the corresponding author
- 关键词：BPEV ; Bell pepper endornavirus ; SNV ; single nucleotide variation ; ds ; double-stranded ; NGS ; next-generation sequencing ; SRA ; Sequence Read Archive ; NCBI ; National Center for Biotechnology Information ; VCF ; Variant Call Format ; IGV ; Integrative Genomics Viewer
- 刊名：Gene
- 出版年：2016
- 出版时间：10 January 2016
- 年：2016
- 卷：575
- 期：2
- 页码：712-717
- 全文大小：942 K
文摘
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Eight Bell pepper endornavirus (BPEV) isolates were identified from nine different pepper transcriptomes.
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Phylogenetic identified two different groups of BPEV isolates.
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Recombination analysis identified two possible recombinant events in the isolate Yolo Wonder.
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Single nucleotide variation profiles revealed the presence of BPEV variants within a single pepper cultivar.