Quantitative profiling of O-glycans by electrospray ionization- and matrix-assisted laser desorption ionization-time-of-flight-mass spectrometry after in-gel derivatization with isotope-coded 1-phenyl-3-methyl-5-pyrazolone
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10">Isotope coded labeling of O-glycans by PMP is evaluated as in-gel reaction after 1D-GE (innovative step).

15">In-gel reaction results in only marginal loss of sensitivity (LOD) compared to in-solution reaction.

Sensitivity of MALDI-MS is comparable with those attained by RP-HPLC-ESI-MS. Reproducibility and reliability of quantitation is worse.

5">The applicability of in-gel reaction for analyzing O-glycosylation in proteins of therapeutic relevance is demonstrated.

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