Caspases are cysteine proteases that are essentia
l for cytokine
maturation and apoptosis. To faci
litate thedissection of caspase function in vitro and in vivo, we have synthesized irreversib
le caspase inhibitors withbiotin attached via
linker ar
ms of various
lengths (
12a-
d) and a 2,4-dinitropheny
l labe
led inhibitor (
13).Affinity
labe
ling of apoptotic extracts fo
llowed by b
lotting revea
ls that these affinity probes detect activecaspases. Using the strong affinity of avidin for biotin, we have iso
lated affinity-
labe
led caspase 6 fro
mapoptotic cytoso
lic extracts of ce
lls overexpressing procaspase 6 by treat
ment with
12c, which containsbiotin attached to the N
mages/entities/epsiv.gif">-
lysine of the inhibitor by a 22.5 Å
linker ar
m, fo
llowed by affinity purification on
mono
meric avidin-sepharose beads. Co
mpound
13 has proven sufficient
ly ce
ll per
meab
le to rescue ce
llsfro
m apoptotic execution. These nove
l caspase inhibitors shou
ld provide powerfu
l probes for the study ofthe active caspase proteo
me during apoptosis both in vitro and in vivo.