Fragment-based lead discovery has been successfully applied to the aspartyl protease enzyme
-secretase(BACE-1). Fragment hits that contained an aminopyridine motif binding to the two catalytic aspartic acidresidues in the active site of the enzyme were the chemical starting points. Structure-based design approacheshave led to identification of low micromolar lead compounds that retain these interactions and additionallyoccupy adjacent hydrophobic pockets of the active site. These leads form two subseries, for which compounds
4 (IC
50 = 25
M) and
6c (IC
50 = 24
M) are representative. In the latter series, further optimization has ledto
8a (IC
50 = 690 nM).