Ubiquitin is a pro
minent regulatory protein in nu
merous biological processes, including targetedprotein degradation, endocytic sorting, transcriptional control, intranuclear localization, and retroviral virionbudding. Ubiquitin-associated (UBA) do
mains, ubiquitin interacting
motifs (UIM), and coupling of ubiquitinconjugation to ER degradation (CUE)
motifs have been identified as ubiquitin receptors. The DNA repairprotein hHR23a has two UBA do
mains that can each bind ubiquitin in addition to an N-ter
minal UBLdo
main that binds S5a and S2, two co
mponents of the 26S proteaso
me. Here we reveal hHR23a recognizesubiquitin through a predo
minately hydrophobic surface for
med by residues within
![](/i<font color=)
mages/gifchars/alpha.gif" BORDER=0>1 and
![](/i<font color=)
mages/gifchars/alpha.gif" BORDER=0>3 of each ofits UBA do
mains. These two UBA surfaces bind a region on ubiquitin that includes K48. These findingshave i
mplications for published studies revealing that hHR23a inhibits K48-linked polyubiquitin chainfor
mation. In addition, by using
15N NMR relaxation experi
ments, we find that binding ubiquitin requiresa structural change in hHR23a. HHR23 proteins are hypothesized to link ubiquitin to S5a, and we providedirect evidence that hHR23 could for
m a ternary co
mplex with ubiquitin and S5a.